Analysis of interatomic Contacts of Structural Units in PDB entry:
6PVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PVA entry

There are 2 chains in PDB entry 6PVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG -1ARG 223
A
 PRO 3LYS 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6PVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 6Right-handed alpha
Helix 2
AA2
B
8 22Right-handed alpha
Helix 3
AA3
B
26 31Right-handed alpha
Helix 4
AA4
B
34 36Right-handed 310
Helix 5
AA5
B
37 55Right-handed alpha
Helix 6
AA6
B
73 79Right-handed alpha
Helix 7
AA7
B
79 84Right-handed alpha
Helix 8
AA8
B
93 104Right-handed alpha
Helix 9
AA9
B
105 109Right-handed 310
Helix 10
AB1
B
118 122Right-handed 310
Helix 11
AB2
B
137 141Right-handed 310
Helix 12
AB3
B
142 155Right-handed alpha
Helix 13
AB4
B
186 196Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6PVA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
86 91parallel
Strand 3
B
64 68parallel
Strand 4
B
129 135parallel
Strand 5
B
157 169parallel
Strand 6
B
216 223anti-parallel
Strand 7
B
200 206anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
182 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il