Analysis of interatomic Contacts of Structural Units in PDB entry:
6PVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PVF entry

There is 1 chain in PDB entry 6PVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5VAL 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6PVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
52 62Right-handed alpha
Helix 3
AA3
A
65 72Right-handed alpha
Helix 4
AA4
A
73 75Right-handed 310
Helix 5
AA5
A
109 123Right-handed alpha
Helix 6
AA6
A
171 176Right-handed 310
Helix 7
AA7
A
196 201Right-handed alpha
Helix 8
AA8
A
203 211Right-handed 310
Helix 9
AA9
A
261 271Right-handed alpha
Helix 10
AB1
A
274 283Right-handed alpha
Helix 11
AB2
A
284 285Right-handed 310
Helix 12
AB3
A
286 290Right-handed 310
Helix 13
AB4
A
315 318Right-handed 310
Helix 14
AB5
A
327 347Right-handed alpha
Helix 15
AB6
A
350 378Right-handed alpha
Helix 16
AB7
A
391 395Right-handed 310
Helix 17
AB8
A
397 400Right-handed 310
Helix 18
AB9
A
401 406Right-handed alpha
Helix 19
AC1
A
408 427Right-handed alpha
Helix 20
AC2
A
436 443Right-handed alpha
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There are 4 sheets in PDB entry 6PVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
32 37parallel
Strand 3
A
9 13parallel
Strand 4
A
161 164parallel
Strand 5
A
311 313parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
105 108anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
80 84anti-parallel
Strand 3
A
219 224parallel
Strand 4
A
227 234anti-parallel
Strand 5
A
239 247anti-parallel
Strand 6
A
184 194anti-parallel
Strand 7
A
291 297anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 138first strand
Strand 2
A
143 149anti-parallel
Strand 3
A
154 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il