Analysis of interatomic Contacts of Structural Units in PDB entry:
6PVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PVK entry

There are 17 chains in PDB entry 6PVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 3	C 2925
C	ALA 2	ARG 221
D	LYS 3	LYS 207
E	PRO 2	LEU 206
J	THR 4	ARG 144
K	ILE 2	VAL 121
L	LEU 3	ALA 139
N	SER 2	VAL 120
P	GLN 5	ARG 107
Q	PRO 2	LEU 117
R	TYR 2	ASN 101
S	GLN 2	LYS 110
T	ASP 3	GLU 91
U	HIS 2	LEU 101
b	PRO 4	ASN 55
Y	MET 1	ALA 63
d	PHE 5	SER 43

There are 52 helices in PDB entry 6PVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	133	135	Right-handed 310
Helix 2	AA2	C	177	179	Right-handed 310
Helix 3	AA3	C	197	201	Right-handed 310
Helix 4	AA4	C	207	214	Right-handed alpha
Helix 5	AA5	D	57	61	Right-handed 310
Helix 6	AA6	D	62	69	Right-handed alpha
Helix 7	AA7	D	70	72	Right-handed 310
Helix 8	AA8	D	98	102	Right-handed 310
Helix 9	AA9	E	30	43	Right-handed alpha
Helix 10	AB1	E	109	120	Right-handed alpha
Helix 11	AB2	E	135	146	Right-handed alpha
Helix 12	AB3	E	160	166	Right-handed alpha
Helix 13	AB4	E	179	181	Right-handed 310
Helix 14	AB5	E	184	189	Right-handed alpha
Helix 15	AB6	E	196	206	Right-handed alpha
Helix 16	AB7	J	25	37	Right-handed alpha
Helix 17	AB8	J	59	63	Right-handed 310
Helix 18	AB9	J	68	73	Right-handed alpha
Helix 19	AC1	J	92	97	Right-handed alpha
Helix 20	AC2	J	97	110	Right-handed alpha
Helix 21	AC3	J	114	119	Right-handed alpha
Helix 22	AC4	K	111	118	Right-handed alpha
Helix 23	AC5	L	92	97	Right-handed alpha
Helix 24	AC6	L	129	139	Right-handed alpha
Helix 25	AC7	N	9	23	Right-handed alpha
Helix 26	AC8	N	34	41	Right-handed alpha
Helix 27	AC9	N	44	54	Right-handed alpha
Helix 28	AD1	N	55	66	Right-handed alpha
Helix 29	AD2	P	6	11	Right-handed alpha
Helix 30	AD3	P	100	104	Right-handed 310
Helix 31	AD4	Q	10	19	Right-handed alpha
Helix 32	AD5	Q	31	36	Right-handed alpha
Helix 33	AD6	Q	36	41	Right-handed alpha
Helix 34	AD7	Q	44	49	Right-handed alpha
Helix 35	AD8	Q	51	56	Right-handed alpha
Helix 36	AD9	Q	57	70	Right-handed alpha
Helix 37	AE1	Q	71	73	Right-handed 310
Helix 38	AE2	Q	75	83	Right-handed alpha
Helix 39	AE3	Q	102	112	Right-handed alpha
Helix 40	AE4	S	28	34	Right-handed alpha
Helix 41	AE5	S	44	62	Right-handed alpha
Helix 42	AE6	T	3	6	Right-handed 310
Helix 43	AE7	T	14	21	Right-handed alpha
Helix 44	AE8	T	36	48	Right-handed alpha
Helix 45	AE9	b	10	15	Right-handed alpha
Helix 46	AF1	b	16	18	Right-handed 310
Helix 47	AF2	Y	2	6	Right-handed alpha
Helix 48	AF3	Y	9	33	Right-handed alpha
Helix 49	AF4	Y	40	61	Right-handed alpha
Helix 50	AF5	d	8	17	Right-handed alpha
Helix 51	AF6	d	17	22	Right-handed alpha
Helix 52	AF7	d	27	38	Right-handed alpha

There are 29 sheets in PDB entry 6PVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	62	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	105	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	75	82	anti-parallel
Strand 4	C	115	117	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	140	142	anti-parallel
Strand 4	C	162	163	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	175	first strand
Strand 2	C	181	185	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	202	203	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	24	27	anti-parallel
Strand 3	D	185	189	anti-parallel
Strand 4	D	171	180	anti-parallel
Strand 5	D	108	110	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	48	50	anti-parallel
Strand 3	D	82	83	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	77	79	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	162	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	126	first strand
Strand 2	E	192	195	parallel
Strand 3	E	154	156	parallel
Strand 4	E	175	177	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	125	first strand
Strand 2	J	54	58	parallel
Strand 3	J	16	20	parallel
Strand 4	J	139	140	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	76	first strand
Strand 2	J	87	88	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	9	first strand
Strand 2	K	18	23	anti-parallel
Strand 3	K	38	42	anti-parallel
Strand 4	K	58	61	anti-parallel
Strand 5	K	85	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	110	111	first strand
Strand 2	L	127	128	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	33	first strand
Strand 2	N	113	118	anti-parallel
Strand 3	N	102	106	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	72	first strand
Strand 2	N	77	78	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	43	49	first strand
Strand 2	P	28	34	anti-parallel
Strand 3	P	84	91	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	61	68	first strand
Strand 2	P	71	78	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	12	14	first strand
Strand 2	R	3	5	anti-parallel
Strand 3	R	38	39	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	22	first strand
Strand 2	R	91	101	anti-parallel
Strand 3	R	57	67	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	75	first strand
Strand 2	R	84	88	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	10	first strand
Strand 2	S	101	109	anti-parallel
Strand 3	S	69	78	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	84	first strand
Strand 2	S	96	98	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	8	11	first strand
Strand 2	T	25	30	anti-parallel
Strand 3	T	76	83	anti-parallel
Strand 4	T	51	59	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	63	66	first strand
Strand 2	T	69	72	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	20	21	first strand
Strand 2	U	9	11	anti-parallel
Strand 3	U	68	70	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	23	27	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	63	64	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	27	28	first strand
Strand 2	b	37	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PVK