Analysis of interatomic Contacts of Structural Units in PDB entry:
6PVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PVM entry

There are 4 chains in PDB entry 6PVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 115ARG 758
B
 LYS 115ARG 758
C
 LYS 115ARG 758
D
 LYS 115ARG 758
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 6PVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 129Right-handed alpha
Helix 2
AA2
A
132 147Right-handed alpha
Helix 3
AA3
A
148 150Right-handed 310
Helix 4
AA4
A
153 161Right-handed alpha
Helix 5
AA5
A
172 178Right-handed alpha
Helix 6
AA6
A
184 196Right-handed alpha
Helix 7
AA7
A
199 205Right-handed alpha
Helix 8
AA8
A
217 225Right-handed alpha
Helix 9
AA9
A
228 237Right-handed alpha
Helix 10
AB1
A
266 272Right-handed alpha
Helix 11
AB2
A
274 283Right-handed alpha
Helix 12
AB3
A
298 305Right-handed alpha
Helix 13
AB4
A
316 328Right-handed alpha
Helix 14
AB5
A
330 335Right-handed alpha
Helix 15
AB6
A
343 351Right-handed alpha
Helix 16
AB7
A
353 363Right-handed alpha
Helix 17
AB8
A
370 374Right-handed 310
Helix 18
AB9
A
402 409Right-handed alpha
Helix 19
AC1
A
415 420Right-handed alpha
Helix 20
AC2
A
422 436Right-handed alpha
Helix 21
AC3
A
436 458Right-handed alpha
Helix 22
AC4
A
486 505Right-handed alpha
Helix 23
AC5
A
519 540Right-handed alpha
Helix 24
AC6
A
548 561Right-handed alpha
Helix 25
AC7
A
562 567Right-handed 310
Helix 26
AC8
A
571 581Right-handed alpha
Helix 27
AC9
A
581 586Right-handed alpha
Helix 28
AD1
A
587 608Right-handed alpha
Helix 29
AD2
A
624 637Right-handed alpha
Helix 30
AD3
A
650 664Right-handed alpha
Helix 31
AD4
A
670 685Right-handed alpha
Helix 32
AD5
A
687 707Right-handed alpha
Helix 33
AD6
B
118 129Right-handed alpha
Helix 34
AD7
B
132 147Right-handed alpha
Helix 35
AD8
B
148 150Right-handed 310
Helix 36
AD9
B
153 161Right-handed alpha
Helix 37
AE1
B
172 178Right-handed alpha
Helix 38
AE2
B
184 196Right-handed alpha
Helix 39
AE3
B
199 205Right-handed alpha
Helix 40
AE4
B
217 225Right-handed alpha
Helix 41
AE5
B
228 237Right-handed alpha
Helix 42
AE6
B
266 272Right-handed alpha
Helix 43
AE7
B
274 283Right-handed alpha
Helix 44
AE8
B
298 305Right-handed alpha
Helix 45
AE9
B
316 328Right-handed alpha
Helix 46
AF1
B
330 335Right-handed alpha
Helix 47
AF2
B
343 351Right-handed alpha
Helix 48
AF3
B
353 363Right-handed alpha
Helix 49
AF4
B
370 374Right-handed 310
Helix 50
AF5
B
402 409Right-handed alpha
Helix 51
AF6
B
415 420Right-handed alpha
Helix 52
AF7
B
422 436Right-handed alpha
Helix 53
AF8
B
436 458Right-handed alpha
Helix 54
AF9
B
486 505Right-handed alpha
Helix 55
AG1
B
519 540Right-handed alpha
Helix 56
AG2
B
548 561Right-handed alpha
Helix 57
AG3
B
562 567Right-handed 310
Helix 58
AG4
B
571 581Right-handed alpha
Helix 59
AG5
B
581 586Right-handed alpha
Helix 60
AG6
B
587 608Right-handed alpha
Helix 61
AG7
B
624 637Right-handed alpha
Helix 62
AG8
B
650 664Right-handed alpha
Helix 63
AG9
B
670 685Right-handed alpha
Helix 64
AH1
B
687 707Right-handed alpha
Helix 65
AH2
C
118 129Right-handed alpha
Helix 66
AH3
C
132 147Right-handed alpha
Helix 67
AH4
C
148 150Right-handed 310
Helix 68
AH5
C
153 161Right-handed alpha
Helix 69
AH6
C
172 178Right-handed alpha
Helix 70
AH7
C
184 196Right-handed alpha
Helix 71
AH8
C
199 205Right-handed alpha
Helix 72
AH9
C
217 225Right-handed alpha
Helix 73
AI1
C
228 237Right-handed alpha
Helix 74
AI2
C
266 272Right-handed alpha
Helix 75
AI3
C
274 283Right-handed alpha
Helix 76
AI4
C
298 305Right-handed alpha
Helix 77
AI5
C
316 328Right-handed alpha
Helix 78
AI6
C
330 335Right-handed alpha
Helix 79
AI7
C
343 351Right-handed alpha
Helix 80
AI8
C
353 363Right-handed alpha
Helix 81
AI9
C
370 374Right-handed 310
Helix 82
AJ1
C
402 409Right-handed alpha
Helix 83
AJ2
C
415 420Right-handed alpha
Helix 84
AJ3
C
422 436Right-handed alpha
Helix 85
AJ4
C
436 458Right-handed alpha
Helix 86
AJ5
C
486 505Right-handed alpha
Helix 87
AJ6
C
519 540Right-handed alpha
Helix 88
AJ7
C
548 561Right-handed alpha
Helix 89
AJ8
C
562 567Right-handed 310
Helix 90
AJ9
C
571 581Right-handed alpha
Helix 91
AK1
C
581 586Right-handed alpha
Helix 92
AK2
C
587 608Right-handed alpha
Helix 93
AK3
C
624 637Right-handed alpha
Helix 94
AK4
C
650 664Right-handed alpha
Helix 95
AK5
C
670 685Right-handed alpha
Helix 96
AK6
C
687 707Right-handed alpha
Helix 97
AK7
D
118 129Right-handed alpha
Helix 98
AK8
D
132 147Right-handed alpha
Helix 99
AK9
D
148 150Right-handed 310
Helix 100
AL1
D
153 161Right-handed alpha
Helix 101
AL2
D
172 178Right-handed alpha
Helix 102
AL3
D
184 196Right-handed alpha
Helix 103
AL4
D
199 205Right-handed alpha
Helix 104
AL5
D
217 225Right-handed alpha
Helix 105
AL6
D
228 237Right-handed alpha
Helix 106
AL7
D
266 272Right-handed alpha
Helix 107
AL8
D
274 283Right-handed alpha
Helix 108
AL9
D
298 305Right-handed alpha
Helix 109
AM1
D
316 328Right-handed alpha
Helix 110
AM2
D
330 335Right-handed alpha
Helix 111
AM3
D
343 351Right-handed alpha
Helix 112
AM4
D
353 363Right-handed alpha
Helix 113
AM5
D
370 374Right-handed 310
Helix 114
AM6
D
402 409Right-handed alpha
Helix 115
AM7
D
415 420Right-handed alpha
Helix 116
AM8
D
422 436Right-handed alpha
Helix 117
AM9
D
436 458Right-handed alpha
Helix 118
AN1
D
486 505Right-handed alpha
Helix 119
AN2
D
519 540Right-handed alpha
Helix 120
AN3
D
548 561Right-handed alpha
Helix 121
AN4
D
562 567Right-handed 310
Helix 122
AN5
D
571 581Right-handed alpha
Helix 123
AN6
D
581 586Right-handed alpha
Helix 124
AN7
D
587 608Right-handed alpha
Helix 125
AN8
D
624 637Right-handed alpha
Helix 126
AN9
D
650 664Right-handed alpha
Helix 127
AO1
D
670 685Right-handed alpha
Helix 128
AO2
D
687 707Right-handed alpha
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There are 4 sheets in PDB entry 6PVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
735 736anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
735 736anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
387 388first strand
Strand 2
C
735 736anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
387 388first strand
Strand 2
D
735 736anti-parallel
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