Analysis of interatomic Contacts of Structural Units in PDB entry:
6PVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PVN entry

There are 4 chains in PDB entry 6PVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 115ARG 758
B
 LYS 115ARG 758
C
 LYS 115ARG 758
D
 LYS 115ARG 758
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are124 helices in PDB entry 6PVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 130Right-handed alpha
Helix 2
AA2
A
132 149Right-handed alpha
Helix 3
AA3
A
153 163Right-handed alpha
Helix 4
AA4
A
172 178Right-handed alpha
Helix 5
AA5
A
182 197Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
217 225Right-handed alpha
Helix 8
AA8
A
227 238Right-handed alpha
Helix 9
AA9
A
266 272Right-handed alpha
Helix 10
AB1
A
274 284Right-handed alpha
Helix 11
AB2
A
298 305Right-handed alpha
Helix 12
AB3
A
316 328Right-handed alpha
Helix 13
AB4
A
330 334Right-handed 310
Helix 14
AB5
A
343 352Right-handed alpha
Helix 15
AB6
A
353 363Right-handed alpha
Helix 16
AB7
A
367 374Right-handed 310
Helix 17
AB8
A
402 410Right-handed alpha
Helix 18
AB9
A
415 420Right-handed alpha
Helix 19
AC1
A
422 436Right-handed alpha
Helix 20
AC2
A
436 459Right-handed alpha
Helix 21
AC3
A
482 505Right-handed alpha
Helix 22
AC4
A
520 535Right-handed alpha
Helix 23
AC5
A
546 561Right-handed alpha
Helix 24
AC6
A
562 565Right-handed 310
Helix 25
AC7
A
570 576Right-handed alpha
Helix 26
AC8
A
581 586Right-handed alpha
Helix 27
AC9
A
586 610Right-handed alpha
Helix 28
AD1
A
626 634Right-handed alpha
Helix 29
AD2
A
650 665Right-handed alpha
Helix 30
AD3
A
670 681Right-handed alpha
Helix 31
AD4
A
687 704Right-handed alpha
Helix 32
AD5
B
118 130Right-handed alpha
Helix 33
AD6
B
132 149Right-handed alpha
Helix 34
AD7
B
153 163Right-handed alpha
Helix 35
AD8
B
172 178Right-handed alpha
Helix 36
AD9
B
182 197Right-handed alpha
Helix 37
AE1
B
199 205Right-handed alpha
Helix 38
AE2
B
217 225Right-handed alpha
Helix 39
AE3
B
227 238Right-handed alpha
Helix 40
AE4
B
266 272Right-handed alpha
Helix 41
AE5
B
274 284Right-handed alpha
Helix 42
AE6
B
298 305Right-handed alpha
Helix 43
AE7
B
316 328Right-handed alpha
Helix 44
AE8
B
330 334Right-handed 310
Helix 45
AE9
B
343 352Right-handed alpha
Helix 46
AF1
B
353 363Right-handed alpha
Helix 47
AF2
B
367 374Right-handed 310
Helix 48
AF3
B
402 410Right-handed alpha
Helix 49
AF4
B
415 420Right-handed alpha
Helix 50
AF5
B
422 436Right-handed alpha
Helix 51
AF6
B
436 459Right-handed alpha
Helix 52
AF7
B
482 505Right-handed alpha
Helix 53
AF8
B
520 535Right-handed alpha
Helix 54
AF9
B
546 561Right-handed alpha
Helix 55
AG1
B
562 565Right-handed 310
Helix 56
AG2
B
570 576Right-handed alpha
Helix 57
AG3
B
581 586Right-handed alpha
Helix 58
AG4
B
586 610Right-handed alpha
Helix 59
AG5
B
626 634Right-handed alpha
Helix 60
AG6
B
650 665Right-handed alpha
Helix 61
AG7
B
670 681Right-handed alpha
Helix 62
AG8
B
687 704Right-handed alpha
Helix 63
AG9
C
118 130Right-handed alpha
Helix 64
AH1
C
132 149Right-handed alpha
Helix 65
AH2
C
153 163Right-handed alpha
Helix 66
AH3
C
172 178Right-handed alpha
Helix 67
AH4
C
182 197Right-handed alpha
Helix 68
AH5
C
199 205Right-handed alpha
Helix 69
AH6
C
217 225Right-handed alpha
Helix 70
AH7
C
227 238Right-handed alpha
Helix 71
AH8
C
266 272Right-handed alpha
Helix 72
AH9
C
274 284Right-handed alpha
Helix 73
AI1
C
298 305Right-handed alpha
Helix 74
AI2
C
316 328Right-handed alpha
Helix 75
AI3
C
330 334Right-handed 310
Helix 76
AI4
C
343 352Right-handed alpha
Helix 77
AI5
C
353 363Right-handed alpha
Helix 78
AI6
C
367 374Right-handed 310
Helix 79
AI7
C
402 410Right-handed alpha
Helix 80
AI8
C
415 420Right-handed alpha
Helix 81
AI9
C
422 436Right-handed alpha
Helix 82
AJ1
C
436 459Right-handed alpha
Helix 83
AJ2
C
482 505Right-handed alpha
Helix 84
AJ3
C
520 535Right-handed alpha
Helix 85
AJ4
C
546 561Right-handed alpha
Helix 86
AJ5
C
562 565Right-handed 310
Helix 87
AJ6
C
570 576Right-handed alpha
Helix 88
AJ7
C
581 586Right-handed alpha
Helix 89
AJ8
C
586 610Right-handed alpha
Helix 90
AJ9
C
626 634Right-handed alpha
Helix 91
AK1
C
650 665Right-handed alpha
Helix 92
AK2
C
670 681Right-handed alpha
Helix 93
AK3
C
687 704Right-handed alpha
Helix 94
AK4
D
118 130Right-handed alpha
Helix 95
AK5
D
132 149Right-handed alpha
Helix 96
AK6
D
153 163Right-handed alpha
Helix 97
AK7
D
172 178Right-handed alpha
Helix 98
AK8
D
182 197Right-handed alpha
Helix 99
AK9
D
199 205Right-handed alpha
Helix 100
AL1
D
217 225Right-handed alpha
Helix 101
AL2
D
227 238Right-handed alpha
Helix 102
AL3
D
266 272Right-handed alpha
Helix 103
AL4
D
274 284Right-handed alpha
Helix 104
AL5
D
298 305Right-handed alpha
Helix 105
AL6
D
316 328Right-handed alpha
Helix 106
AL7
D
330 334Right-handed 310
Helix 107
AL8
D
343 352Right-handed alpha
Helix 108
AL9
D
353 363Right-handed alpha
Helix 109
AM1
D
367 374Right-handed 310
Helix 110
AM2
D
402 410Right-handed alpha
Helix 111
AM3
D
415 420Right-handed alpha
Helix 112
AM4
D
422 436Right-handed alpha
Helix 113
AM5
D
436 459Right-handed alpha
Helix 114
AM6
D
482 505Right-handed alpha
Helix 115
AM7
D
520 535Right-handed alpha
Helix 116
AM8
D
546 561Right-handed alpha
Helix 117
AM9
D
562 565Right-handed 310
Helix 118
AN1
D
570 576Right-handed alpha
Helix 119
AN2
D
581 586Right-handed alpha
Helix 120
AN3
D
586 610Right-handed alpha
Helix 121
AN4
D
626 634Right-handed alpha
Helix 122
AN5
D
650 665Right-handed alpha
Helix 123
AN6
D
670 681Right-handed alpha
Helix 124
AN7
D
687 704Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6PVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
735 736anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
735 736anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
387 388first strand
Strand 2
C
735 736anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
387 388first strand
Strand 2
D
735 736anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il