Analysis of interatomic Contacts of Structural Units in PDB entry:
6PVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PVP entry

There are 4 chains in PDB entry 6PVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 85HIS 745
B
 SER 85HIS 745
C
 SER 85HIS 745
D
 SER 85HIS 745
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are133 helices in PDB entry 6PVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 130Right-handed alpha
Helix 2
AA2
A
131 146Right-handed alpha
Helix 3
AA3
A
153 163Right-handed alpha
Helix 4
AA4
A
170 178Right-handed alpha
Helix 5
AA5
A
182 196Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
217 225Right-handed alpha
Helix 8
AA8
A
227 238Right-handed alpha
Helix 9
AA9
A
264 272Right-handed alpha
Helix 10
AB1
A
274 284Right-handed alpha
Helix 11
AB2
A
298 305Right-handed alpha
Helix 12
AB3
A
316 329Right-handed alpha
Helix 13
AB4
A
330 335Right-handed 310
Helix 14
AB5
A
343 352Right-handed alpha
Helix 15
AB6
A
353 363Right-handed alpha
Helix 16
AB7
A
370 374Right-handed 310
Helix 17
AB8
A
402 409Right-handed alpha
Helix 18
AB9
A
422 436Right-handed alpha
Helix 19
AC1
A
436 461Right-handed alpha
Helix 20
AC2
A
474 479Right-handed alpha
Helix 21
AC3
A
481 503Right-handed alpha
Helix 22
AC4
A
504 506Right-handed 310
Helix 23
AC5
A
514 520Right-handed alpha
Helix 24
AC6
A
520 542Right-handed alpha
Helix 25
AC7
A
546 563Right-handed alpha
Helix 26
AC8
A
569 574Right-handed alpha
Helix 27
AC9
A
574 591Right-handed alpha
Helix 28
AD1
A
593 607Right-handed alpha
Helix 29
AD2
A
617 621Right-handed 310
Helix 30
AD3
A
624 638Right-handed alpha
Helix 31
AD4
A
652 666Right-handed alpha
Helix 32
AD5
A
668 687Right-handed alpha
Helix 33
AD6
A
688 706Right-handed alpha
Helix 34
AD7
B
116 130Right-handed alpha
Helix 35
AD8
B
131 146Right-handed alpha
Helix 36
AD9
B
153 163Right-handed alpha
Helix 37
AE1
B
170 178Right-handed alpha
Helix 38
AE2
B
182 196Right-handed alpha
Helix 39
AE3
B
199 205Right-handed alpha
Helix 40
AE4
B
217 225Right-handed alpha
Helix 41
AE5
B
227 238Right-handed alpha
Helix 42
AE6
B
264 272Right-handed alpha
Helix 43
AE7
B
274 284Right-handed alpha
Helix 44
AE8
B
298 305Right-handed alpha
Helix 45
AE9
B
316 329Right-handed alpha
Helix 46
AF1
B
330 335Right-handed 310
Helix 47
AF2
B
343 352Right-handed alpha
Helix 48
AF3
B
353 363Right-handed alpha
Helix 49
AF4
B
370 374Right-handed 310
Helix 50
AF5
B
402 409Right-handed alpha
Helix 51
AF6
B
422 436Right-handed alpha
Helix 52
AF7
B
436 461Right-handed alpha
Helix 53
AF8
B
474 479Right-handed alpha
Helix 54
AF9
B
481 503Right-handed alpha
Helix 55
AG1
B
504 506Right-handed 310
Helix 56
AG2
B
514 520Right-handed alpha
Helix 57
AG3
B
520 542Right-handed alpha
Helix 58
AG4
B
546 563Right-handed alpha
Helix 59
AG5
B
564 566Right-handed 310
Helix 60
AG6
B
569 574Right-handed alpha
Helix 61
AG7
B
574 591Right-handed alpha
Helix 62
AG8
B
593 607Right-handed alpha
Helix 63
AG9
B
617 621Right-handed 310
Helix 64
AH1
B
624 638Right-handed alpha
Helix 65
AH2
B
652 666Right-handed alpha
Helix 66
AH3
B
668 687Right-handed alpha
Helix 67
AH4
B
688 706Right-handed alpha
Helix 68
AH5
C
116 130Right-handed alpha
Helix 69
AH6
C
131 146Right-handed alpha
Helix 70
AH7
C
153 163Right-handed alpha
Helix 71
AH8
C
170 178Right-handed alpha
Helix 72
AH9
C
182 196Right-handed alpha
Helix 73
AI1
C
199 205Right-handed alpha
Helix 74
AI2
C
217 225Right-handed alpha
Helix 75
AI3
C
227 238Right-handed alpha
Helix 76
AI4
C
264 272Right-handed alpha
Helix 77
AI5
C
274 284Right-handed alpha
Helix 78
AI6
C
298 305Right-handed alpha
Helix 79
AI7
C
316 329Right-handed alpha
Helix 80
AI8
C
330 335Right-handed 310
Helix 81
AI9
C
343 352Right-handed alpha
Helix 82
AJ1
C
353 363Right-handed alpha
Helix 83
AJ2
C
370 374Right-handed 310
Helix 84
AJ3
C
402 409Right-handed alpha
Helix 85
AJ4
C
422 436Right-handed alpha
Helix 86
AJ5
C
436 461Right-handed alpha
Helix 87
AJ6
C
474 479Right-handed alpha
Helix 88
AJ7
C
481 503Right-handed alpha
Helix 89
AJ8
C
504 506Right-handed 310
Helix 90
AJ9
C
514 520Right-handed alpha
Helix 91
AK1
C
520 542Right-handed alpha
Helix 92
AK2
C
546 563Right-handed alpha
Helix 93
AK3
C
569 574Right-handed alpha
Helix 94
AK4
C
574 591Right-handed alpha
Helix 95
AK5
C
593 607Right-handed alpha
Helix 96
AK6
C
617 621Right-handed 310
Helix 97
AK7
C
624 638Right-handed alpha
Helix 98
AK8
C
652 666Right-handed alpha
Helix 99
AK9
C
668 687Right-handed alpha
Helix 100
AL1
C
688 706Right-handed alpha
Helix 101
AL2
D
116 130Right-handed alpha
Helix 102
AL3
D
131 146Right-handed alpha
Helix 103
AL4
D
153 163Right-handed alpha
Helix 104
AL5
D
170 178Right-handed alpha
Helix 105
AL6
D
182 196Right-handed alpha
Helix 106
AL7
D
199 205Right-handed alpha
Helix 107
AL8
D
217 225Right-handed alpha
Helix 108
AL9
D
227 238Right-handed alpha
Helix 109
AM1
D
264 272Right-handed alpha
Helix 110
AM2
D
274 284Right-handed alpha
Helix 111
AM3
D
298 305Right-handed alpha
Helix 112
AM4
D
316 329Right-handed alpha
Helix 113
AM5
D
330 335Right-handed 310
Helix 114
AM6
D
343 352Right-handed alpha
Helix 115
AM7
D
353 363Right-handed alpha
Helix 116
AM8
D
370 374Right-handed 310
Helix 117
AM9
D
402 409Right-handed alpha
Helix 118
AN1
D
422 436Right-handed alpha
Helix 119
AN2
D
436 461Right-handed alpha
Helix 120
AN3
D
474 479Right-handed alpha
Helix 121
AN4
D
481 503Right-handed alpha
Helix 122
AN5
D
504 506Right-handed 310
Helix 123
AN6
D
514 520Right-handed alpha
Helix 124
AN7
D
520 542Right-handed alpha
Helix 125
AN8
D
546 563Right-handed alpha
Helix 126
AN9
D
569 574Right-handed alpha
Helix 127
AO1
D
574 591Right-handed alpha
Helix 128
AO2
D
593 607Right-handed alpha
Helix 129
AO3
D
617 621Right-handed 310
Helix 130
AO4
D
624 638Right-handed alpha
Helix 131
AO5
D
652 666Right-handed alpha
Helix 132
AO6
D
668 687Right-handed alpha
Helix 133
AO7
D
688 706Right-handed alpha
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There are 4 sheets in PDB entry 6PVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
735 736anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
735 736anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 386first strand
Strand 2
C
735 736anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 386first strand
Strand 2
D
735 736anti-parallel
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