Analysis of interatomic Contacts of Structural Units in PDB entry:
6PW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PW9 entry

There are 4 chains in PDB entry 6PW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 155
B
 ASN 113PRO 841
C
 MET 1ARG 160
D
 LYS 35ASN 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6PW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
32 39Right-handed alpha
Helix 3
AA3
A
42 45Right-handed 310
Helix 4
AA4
A
88 104Right-handed alpha
Helix 5
AA5
A
117 126Right-handed alpha
Helix 6
AA6
B
114 127Right-handed alpha
Helix 7
AA7
B
129 144Right-handed alpha
Helix 8
AA8
B
147 161Right-handed alpha
Helix 9
AA9
B
164 176Right-handed alpha
Helix 10
AB1
B
177 181Right-handed 310
Helix 11
AB2
B
185 203Right-handed alpha
Helix 12
AB3
B
205 216Right-handed alpha
Helix 13
AB4
B
217 220Right-handed 310
Helix 14
AB5
B
222 237Right-handed alpha
Helix 15
AB6
B
240 254Right-handed alpha
Helix 16
AB7
B
257 269Right-handed alpha
Helix 17
AB8
B
272 287Right-handed alpha
Helix 18
AB9
B
291 295Right-handed 310
Helix 19
AC1
B
296 301Right-handed alpha
Helix 20
AC2
B
303 320Right-handed alpha
Helix 21
AC3
B
324 330Right-handed alpha
Helix 22
AC4
B
336 357Right-handed alpha
Helix 23
AC5
B
370 388Right-handed alpha
Helix 24
AC6
B
389 404Right-handed alpha
Helix 25
AC7
B
407 420Right-handed alpha
Helix 26
AC8
B
424 437Right-handed alpha
Helix 27
AC9
B
441 454Right-handed alpha
Helix 28
AD1
B
458 466Right-handed alpha
Helix 29
AD2
B
474 482Right-handed alpha
Helix 30
AD3
B
484 498Right-handed alpha
Helix 31
AD4
B
501 521Right-handed alpha
Helix 32
AD5
B
522 524Right-handed 310
Helix 33
AD6
B
525 532Right-handed alpha
Helix 34
AD7
B
535 547Right-handed alpha
Helix 35
AD8
B
548 550Right-handed 310
Helix 36
AD9
B
551 571Right-handed alpha
Helix 37
AE1
B
643 648Right-handed alpha
Helix 38
AE2
B
653 668Right-handed alpha
Helix 39
AE3
B
671 683Right-handed alpha
Helix 40
AE4
B
687 700Right-handed alpha
Helix 41
AE5
B
705 722Right-handed alpha
Helix 42
AE6
B
727 742Right-handed alpha
Helix 43
AE7
B
746 758Right-handed alpha
Helix 44
AE8
B
761 775Right-handed alpha
Helix 45
AE9
B
776 778Right-handed 310
Helix 46
AF1
B
779 787Right-handed alpha
Helix 47
AF2
B
798 811Right-handed alpha
Helix 48
AF3
B
820 832Right-handed alpha
Helix 49
AF4
B
835 839Right-handed 310
Helix 50
AF5
C
7 12Right-handed alpha
Helix 51
AF6
C
13 22Right-handed alpha
Helix 52
AF7
C
27 35Right-handed alpha
Helix 53
AF8
C
79 82Right-handed 310
Helix 54
AF9
C
86 102Right-handed alpha
Helix 55
AG1
C
116 124Right-handed alpha
Helix 56
AG2
C
151 159Right-handed alpha
Helix 57
AG3
D
60 85Right-handed alpha
Helix 58
AG4
D
91 103Right-handed alpha
Helix 59
AG5
D
105 115Right-handed alpha
Helix 60
AG6
D
120 129Right-handed alpha
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There are 3 sheets in PDB entry 6PW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
54 66anti-parallel
Strand 4
A
69 78anti-parallel
Strand 5
A
108 114parallel
Strand 6
A
147 153anti-parallel
Strand 7
A
130 135anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 5first strand
Strand 2
C
43 46anti-parallel
Strand 3
C
52 61anti-parallel
Strand 4
C
69 77anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 112first strand
Strand 2
C
144 150anti-parallel
Strand 3
C
129 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il