Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PWC entry

There are 5 chains in PDB entry 6PWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
ALA 49THR 416
B
ARG 9LEU 13
A
ARG 7PRO 356
H
VAL 5VAL 221
L
SER 1HIS 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6PWC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
R
59 91Right-handed alpha
Helix 2
AA2
R
92 94Right-handed 310
Helix 3
AA3
R
98 129Right-handed alpha
Helix 4
AA4
R
137 172Right-handed alpha
Helix 5
AA5
R
172 179Right-handed alpha
Helix 6
AA6
R
181 200Right-handed alpha
Helix 7
AA7
R
201 205Right-handed 310
Helix 8
AA8
R
218 220Right-handed 310
Helix 9
AA9
R
229 245Right-handed alpha
Helix 10
AB1
R
245 269Right-handed alpha
Helix 11
AB2
R
294 329Right-handed alpha
Helix 12
AB3
R
335 368Right-handed alpha
Helix 13
AB4
R
368 383Right-handed alpha
Helix 14
AB5
A
65 72Right-handed alpha
Helix 15
AB6
A
98 109Right-handed alpha
Helix 16
AB7
A
278 282Right-handed 310
Helix 17
AB8
H
31 33Right-handed 310
Helix 18
AB9
H
90 94Right-handed 310
Helix 19
AC1
H
166 168Right-handed 310
Helix 20
AC2
L
80 84Right-handed 310
Helix 21
AC3
L
122 127Right-handed alpha
Helix 22
AC4
L
185 190Right-handed alpha
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There are 17 sheets in PDB entry 6PWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
208 211first strand
Strand 2
R
222 225anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
411 413first strand
Strand 2
A
8 12anti-parallel
Strand 3
A
19 22anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
112 117anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 29first strand
Strand 2
A
169 172parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 77first strand
Strand 2
A
52 63anti-parallel
Strand 3
A
81 87anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 77first strand
Strand 2
A
52 63anti-parallel
Strand 3
A
142 151anti-parallel
Strand 4
A
163 167anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 129first strand
Strand 2
A
288 290anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 188first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
266 274anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 209first strand
Strand 2
A
341 352parallel
Strand 3
A
321 330anti-parallel
Strand 4
A
227 240anti-parallel
Strand 5
A
248 258anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
6 10first strand
Strand 2
H
20 28anti-parallel
Strand 3
H
81 87anti-parallel
Strand 4
H
71 76anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
35 42anti-parallel
Strand 5
H
48 55anti-parallel
Strand 6
H
60 63anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
112 113anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
130 133first strand
Strand 2
H
150 155anti-parallel
Strand 3
H
186 188anti-parallel
Strand 4
H
179 180anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
161 164first strand
Strand 2
H
205 210anti-parallel
Strand 3
H
215 220anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
173 175first strand
Strand 2
H
190 192anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
5 8first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
115 119first strand
Strand 2
L
132 140anti-parallel
Strand 3
L
174 181anti-parallel
Strand 4
L
159 164anti-parallel
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