Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PWF entry

There are 11 chains in PDB entry 6PWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	GLU 133
B	ALA 15	GLY 102
C	LYS 14	LYS 117
D	ARG 30	SER 121
E	PRO 38	GLU 133
F	ASP 24	GLY 102
G	LYS 14	LYS 118
H	ARG 28	SER 121
I	A -73	A 72
J	T -72	T 73
K	PHE 174	GLN 640

There are 67 helices in PDB entry 6PWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	55	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	76	78	Right-handed 310
Helix 4	AA4	A	88	112	Right-handed alpha
Helix 5	AA5	A	113	115	Right-handed 310
Helix 6	AA6	A	120	133	Right-handed alpha
Helix 7	AA7	B	25	29	Right-handed 310
Helix 8	AA8	B	31	41	Right-handed alpha
Helix 9	AA9	B	49	62	Right-handed alpha
Helix 10	AB1	B	66	76	Right-handed alpha
Helix 11	AB2	B	82	93	Right-handed alpha
Helix 12	AB3	C	28	35	Right-handed alpha
Helix 13	AB4	C	45	67	Right-handed alpha
Helix 14	AB5	C	68	70	Right-handed 310
Helix 15	AB6	C	78	87	Right-handed alpha
Helix 16	AB7	C	91	96	Right-handed alpha
Helix 17	AB8	D	37	46	Right-handed alpha
Helix 18	AB9	D	53	61	Right-handed alpha
Helix 19	AC1	D	66	81	Right-handed alpha
Helix 20	AC2	D	88	97	Right-handed alpha
Helix 21	AC3	D	103	119	Right-handed alpha
Helix 22	AC4	E	50	55	Right-handed alpha
Helix 23	AC5	E	63	75	Right-handed alpha
Helix 24	AC6	E	76	78	Right-handed 310
Helix 25	AC7	E	88	112	Right-handed alpha
Helix 26	AC8	E	113	115	Right-handed 310
Helix 27	AC9	E	120	133	Right-handed alpha
Helix 28	AD1	F	31	41	Right-handed alpha
Helix 29	AD2	F	49	54	Right-handed alpha
Helix 30	AD3	F	54	62	Right-handed alpha
Helix 31	AD4	F	66	76	Right-handed alpha
Helix 32	AD5	F	82	93	Right-handed alpha
Helix 33	AD6	G	28	36	Right-handed alpha
Helix 34	AD7	G	46	57	Right-handed alpha
Helix 35	AD8	G	60	65	Right-handed alpha
Helix 36	AD9	G	66	68	Right-handed 310
Helix 37	AE1	G	78	89	Right-handed alpha
Helix 38	AE2	G	90	96	Right-handed alpha
Helix 39	AE3	H	36	46	Right-handed alpha
Helix 40	AE4	H	52	82	Right-handed alpha
Helix 41	AE5	H	103	112	Right-handed alpha
Helix 42	AE6	H	112	120	Right-handed alpha
Helix 43	AE7	K	186	191	Right-handed alpha
Helix 44	AE8	K	193	203	Right-handed alpha
Helix 45	AE9	K	217	225	Right-handed alpha
Helix 46	AF1	K	225	230	Right-handed alpha
Helix 47	AF2	K	242	244	Right-handed 310
Helix 48	AF3	K	245	257	Right-handed alpha
Helix 49	AF4	K	268	273	Right-handed alpha
Helix 50	AF5	K	273	278	Right-handed alpha
Helix 51	AF6	K	291	297	Right-handed alpha
Helix 52	AF7	K	316	320	Right-handed 310
Helix 53	AF8	K	325	330	Right-handed alpha
Helix 54	AF9	K	349	360	Right-handed alpha
Helix 55	AG1	K	363	368	Right-handed alpha
Helix 56	AG2	K	370	374	Right-handed 310
Helix 57	AG3	K	388	393	Right-handed alpha
Helix 58	AG4	K	400	404	Right-handed 310
Helix 59	AG5	K	430	436	Right-handed alpha
Helix 60	AG6	K	453	460	Right-handed alpha
Helix 61	AG7	K	490	501	Right-handed alpha
Helix 62	AG8	K	514	526	Right-handed alpha
Helix 63	AG9	K	540	552	Right-handed alpha
Helix 64	AH1	K	590	595	Right-handed alpha
Helix 65	AH2	K	596	599	Right-handed 310
Helix 66	AH3	K	619	630	Right-handed alpha
Helix 67	AH4	K	634	640	Right-handed alpha

There are 8 sheets in PDB entry 6PWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	209	first strand
Strand 2	K	334	341	parallel
Strand 3	K	307	313	parallel
Strand 4	K	237	240	parallel
Strand 5	K	287	290	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	532	534	first strand
Strand 2	K	560	562	parallel
Strand 3	K	508	510	parallel
Strand 4	K	579	581	parallel
Strand 5	K	609	611	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWF