Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PWI entry

There are 2 chains in PDB entry 6PWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 44ASN 639
B
 GLY 43ASN 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6PWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 91Right-handed alpha
Helix 2
AA2
A
117 127Right-handed alpha
Helix 3
AA3
A
130 134Right-handed 310
Helix 4
AA4
A
155 171Right-handed alpha
Helix 5
AA5
A
204 217Right-handed alpha
Helix 6
AA6
A
242 260Right-handed alpha
Helix 7
AA7
A
279 299Right-handed alpha
Helix 8
AA8
A
315 334Right-handed alpha
Helix 9
AA9
A
357 364Right-handed alpha
Helix 10
AB1
A
384 396Right-handed alpha
Helix 11
AB2
A
441 443Right-handed 310
Helix 12
AB3
A
444 457Right-handed alpha
Helix 13
AB4
A
462 475Right-handed alpha
Helix 14
AB5
A
478 488Right-handed alpha
Helix 15
AB6
A
507 520Right-handed alpha
Helix 16
AB7
A
524 549Right-handed alpha
Helix 17
AB8
A
551 585Right-handed alpha
Helix 18
AB9
A
586 604Right-handed alpha
Helix 19
AC1
A
624 636Right-handed alpha
Helix 20
AC2
B
77 89Right-handed alpha
Helix 21
AC3
B
117 126Right-handed alpha
Helix 22
AC4
B
132 136Right-handed 310
Helix 23
AC5
B
155 171Right-handed alpha
Helix 24
AC6
B
204 217Right-handed alpha
Helix 25
AC7
B
230 234Right-handed 310
Helix 26
AC8
B
242 260Right-handed alpha
Helix 27
AC9
B
279 300Right-handed alpha
Helix 28
AD1
B
315 334Right-handed alpha
Helix 29
AD2
B
357 364Right-handed alpha
Helix 30
AD3
B
384 396Right-handed alpha
Helix 31
AD4
B
441 443Right-handed 310
Helix 32
AD5
B
444 457Right-handed alpha
Helix 33
AD6
B
462 475Right-handed alpha
Helix 34
AD7
B
478 488Right-handed alpha
Helix 35
AD8
B
507 520Right-handed alpha
Helix 36
AD9
B
524 549Right-handed alpha
Helix 37
AE1
B
551 584Right-handed alpha
Helix 38
AE2
B
586 605Right-handed alpha
Helix 39
AE3
B
624 637Right-handed alpha
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There are 6 sheets in PDB entry 6PWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 63first strand
Strand 2
A
177 187anti-parallel
Strand 3
A
137 145anti-parallel
Strand 4
A
148 153anti-parallel
Strand 5
A
106 112parallel
Strand 6
A
67 72parallel
Strand 7
A
94 97parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
222 225parallel
Strand 3
A
262 267parallel
Strand 4
A
305 308parallel
Strand 5
A
340 342parallel
Strand 6
A
371 374parallel
Strand 7
A
399 403parallel
Strand 8
A
430 435parallel
Strand 9
A
191 196parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 611first strand
Strand 2
A
614 616anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 63first strand
Strand 2
B
177 187anti-parallel
Strand 3
B
137 145anti-parallel
Strand 4
B
148 153anti-parallel
Strand 5
B
106 112parallel
Strand 6
B
67 72parallel
Strand 7
B
94 97parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 196first strand
Strand 2
B
222 225parallel
Strand 3
B
262 267parallel
Strand 4
B
305 308parallel
Strand 5
B
340 342parallel
Strand 6
B
371 374parallel
Strand 7
B
399 403parallel
Strand 8
B
430 435parallel
Strand 9
B
191 196parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
609 611first strand
Strand 2
B
614 616anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il