Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PWJ entry

There are 2 chains in PDB entry 6PWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 221ALA 638
B
 LYS 221LYS 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6PWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
222 239Right-handed alpha
Helix 2
AA2
A
247 262Right-handed alpha
Helix 3
AA3
A
272 282Right-handed alpha
Helix 4
AA4
A
283 302Right-handed alpha
Helix 5
AA5
A
325 342Right-handed alpha
Helix 6
AA6
A
367 385Right-handed alpha
Helix 7
AA7
A
403 418Right-handed alpha
Helix 8
AA8
A
455 462Right-handed alpha
Helix 9
AA9
A
464 482Right-handed alpha
Helix 10
AB1
A
494 499Right-handed alpha
Helix 11
AB2
A
500 513Right-handed alpha
Helix 12
AB3
A
517 519Right-handed 310
Helix 13
AB4
A
527 533Right-handed alpha
Helix 14
AB5
A
533 546Right-handed alpha
Helix 15
AB6
A
564 570Right-handed alpha
Helix 16
AB7
A
578 581Right-handed 310
Helix 17
AB8
A
586 602Right-handed alpha
Helix 18
AB9
A
614 623Right-handed alpha
Helix 19
AC1
A
631 636Right-handed alpha
Helix 20
AC2
B
222 239Right-handed alpha
Helix 21
AC3
B
247 262Right-handed alpha
Helix 22
AC4
B
272 283Right-handed alpha
Helix 23
AC5
B
283 301Right-handed alpha
Helix 24
AC6
B
325 342Right-handed alpha
Helix 25
AC7
B
367 385Right-handed alpha
Helix 26
AC8
B
403 418Right-handed alpha
Helix 27
AC9
B
452 462Right-handed alpha
Helix 28
AD1
B
464 482Right-handed alpha
Helix 29
AD2
B
494 499Right-handed alpha
Helix 30
AD3
B
500 513Right-handed alpha
Helix 31
AD4
B
514 519Right-handed 310
Helix 32
AD5
B
527 533Right-handed alpha
Helix 33
AD6
B
533 547Right-handed alpha
Helix 34
AD7
B
564 570Right-handed alpha
Helix 35
AD8
B
577 582Right-handed alpha
Helix 36
AD9
B
586 602Right-handed alpha
Helix 37
AE1
B
614 624Right-handed alpha
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There are 4 sheets in PDB entry 6PWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
316 322anti-parallel
Strand 3
A
265 271anti-parallel
Strand 4
A
356 362anti-parallel
Strand 5
A
391 395parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 451first strand
Strand 2
A
434 445anti-parallel
Strand 3
A
489 492parallel
Strand 4
A
521 526parallel
Strand 5
A
550 556parallel
Strand 6
A
573 576parallel
Strand 7
A
606 609parallel
Strand 8
A
628 630parallel
Strand 9
A
420 429anti-parallel
Strand 10
A
434 445anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 311first strand
Strand 2
B
316 322anti-parallel
Strand 3
B
264 271anti-parallel
Strand 4
B
356 363anti-parallel
Strand 5
B
391 394parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 451first strand
Strand 2
B
434 445anti-parallel
Strand 3
B
489 492parallel
Strand 4
B
521 526parallel
Strand 5
B
550 556parallel
Strand 6
B
573 576parallel
Strand 7
B
606 609parallel
Strand 8
B
628 629parallel
Strand 9
B
420 429anti-parallel
Strand 10
B
434 445anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il