Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PWK entry

There are 2 chains in PDB entry 6PWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 222ASP 635
B
 ALA 222ASP 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6PWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
222 239Right-handed alpha
Helix 2
AA2
A
247 262Right-handed alpha
Helix 3
AA3
A
272 301Right-handed alpha
Helix 4
AA4
A
325 339Right-handed alpha
Helix 5
AA5
A
367 385Right-handed alpha
Helix 6
AA6
A
403 418Right-handed alpha
Helix 7
AA7
A
452 462Right-handed alpha
Helix 8
AA8
A
464 482Right-handed alpha
Helix 9
AA9
A
494 499Right-handed alpha
Helix 10
AB1
A
500 513Right-handed alpha
Helix 11
AB2
A
514 519Right-handed 310
Helix 12
AB3
A
526 533Right-handed alpha
Helix 13
AB4
A
533 547Right-handed alpha
Helix 14
AB5
A
564 570Right-handed alpha
Helix 15
AB6
A
578 582Right-handed 310
Helix 16
AB7
A
586 603Right-handed alpha
Helix 17
AB8
A
614 623Right-handed alpha
Helix 18
AB9
B
223 239Right-handed alpha
Helix 19
AC1
B
247 262Right-handed alpha
Helix 20
AC2
B
272 302Right-handed alpha
Helix 21
AC3
B
325 342Right-handed alpha
Helix 22
AC4
B
367 385Right-handed alpha
Helix 23
AC5
B
403 418Right-handed alpha
Helix 24
AC6
B
452 461Right-handed alpha
Helix 25
AC7
B
464 482Right-handed alpha
Helix 26
AC8
B
494 499Right-handed alpha
Helix 27
AC9
B
500 513Right-handed alpha
Helix 28
AD1
B
514 519Right-handed 310
Helix 29
AD2
B
527 533Right-handed alpha
Helix 30
AD3
B
533 547Right-handed alpha
Helix 31
AD4
B
564 570Right-handed alpha
Helix 32
AD5
B
578 581Right-handed 310
Helix 33
AD6
B
586 603Right-handed alpha
Helix 34
AD7
B
614 623Right-handed alpha
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There are 4 sheets in PDB entry 6PWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
316 322anti-parallel
Strand 3
A
265 271anti-parallel
Strand 4
A
356 362anti-parallel
Strand 5
A
391 394parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 451first strand
Strand 2
A
434 445anti-parallel
Strand 3
A
489 492parallel
Strand 4
A
521 525parallel
Strand 5
A
550 556parallel
Strand 6
A
573 576parallel
Strand 7
A
606 609parallel
Strand 8
A
628 629parallel
Strand 9
A
420 429anti-parallel
Strand 10
A
434 445anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
316 322anti-parallel
Strand 3
B
265 271anti-parallel
Strand 4
B
356 362anti-parallel
Strand 5
B
391 394parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 451first strand
Strand 2
B
434 445anti-parallel
Strand 3
B
489 492parallel
Strand 4
B
521 526parallel
Strand 5
B
550 556parallel
Strand 6
B
573 576parallel
Strand 7
B
606 609parallel
Strand 8
B
628 630parallel
Strand 9
B
420 429anti-parallel
Strand 10
B
434 445anti-parallel
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