Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PWX entry

There are 9 chains in PDB entry 6PWX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	ALA 331
G	LYS 37	ARG 134
H	LYS 20	GLY 101
I	ALA 12	LYS 118
J	THR 29	ALA 121
K	LYS 37	ARG 134
M	ALA 12	LYS 118
N	THR 29	ALA 121
O	T 2	C 110

There are 35 helices in PDB entry 6PWX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	227	234	Right-handed alpha
Helix 2	AA2	G	44	57	Right-handed alpha
Helix 3	AA3	G	63	76	Right-handed alpha
Helix 4	AA4	G	85	114	Right-handed alpha
Helix 5	AA5	G	120	132	Right-handed alpha
Helix 6	AA6	H	24	29	Right-handed 310
Helix 7	AA7	H	30	41	Right-handed alpha
Helix 8	AA8	H	49	77	Right-handed alpha
Helix 9	AA9	H	82	93	Right-handed alpha
Helix 10	AB1	I	16	22	Right-handed alpha
Helix 11	AB2	I	26	36	Right-handed alpha
Helix 12	AB3	I	45	73	Right-handed alpha
Helix 13	AB4	I	79	90	Right-handed alpha
Helix 14	AB5	I	90	97	Right-handed alpha
Helix 15	AB6	J	34	46	Right-handed alpha
Helix 16	AB7	J	52	81	Right-handed alpha
Helix 17	AB8	J	87	99	Right-handed alpha
Helix 18	AB9	J	100	120	Right-handed alpha
Helix 19	AC1	K	44	57	Right-handed alpha
Helix 20	AC2	K	63	76	Right-handed alpha
Helix 21	AC3	K	85	114	Right-handed alpha
Helix 22	AC4	K	120	132	Right-handed alpha
Helix 23	AC5	M	16	21	Right-handed alpha
Helix 24	AC6	M	26	37	Right-handed alpha
Helix 25	AC7	M	45	73	Right-handed alpha
Helix 26	AC8	M	79	89	Right-handed alpha
Helix 27	AC9	M	90	97	Right-handed alpha
Helix 28	AD1	N	34	46	Right-handed alpha
Helix 29	AD2	N	52	81	Right-handed alpha
Helix 30	AD3	N	87	99	Right-handed alpha
Helix 31	AD4	N	101	121	Right-handed alpha
Helix 32	AD5	L	24	29	Right-handed 310
Helix 33	AD6	L	30	41	Right-handed alpha
Helix 34	AD7	L	49	77	Right-handed alpha
Helix 35	AD8	L	82	93	Right-handed alpha

There are 15 sheets in PDB entry 6PWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	309	314	anti-parallel
Strand 4	A	298	303	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	48	52	anti-parallel
Strand 4	A	57	62	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	89	94	anti-parallel
Strand 4	A	100	105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	115	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	133	136	anti-parallel
Strand 4	A	142	144	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	165	169	anti-parallel
Strand 3	A	174	179	anti-parallel
Strand 4	A	185	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	206	first strand
Strand 2	A	212	217	anti-parallel
Strand 3	A	222	226	anti-parallel
Strand 4	A	243	245	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	265	270	anti-parallel
Strand 3	A	275	280	anti-parallel
Strand 4	A	286	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	84	first strand
Strand 2	H	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	H	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	43	first strand
Strand 2	J	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	77	78	first strand
Strand 2	J	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	84	first strand
Strand 2	L	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	119	first strand
Strand 2	L	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	42	43	first strand
Strand 2	N	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	77	78	first strand
Strand 2	N	50	51	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PWX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PWX