Analysis of interatomic Contacts of Structural Units in PDB entry:
6PX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PX9 entry

There are 6 chains in PDB entry 6PX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 223	ASP 479
B	ASP 223	ASP 479
C	ASP 223	ASP 479
D	LEU 222	ASP 479
E	ASP 223	ASP 479
F	ASP 223	ASP 479

There are 47 helices in PDB entry 6PX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	244	251	Right-handed alpha
Helix 2	AA2	A	262	277	Right-handed alpha
Helix 3	AA3	A	288	302	Right-handed alpha
Helix 4	AA4	A	333	338	Right-handed alpha
Helix 5	AA5	A	345	349	Right-handed 310
Helix 6	AA6	A	421	433	Right-handed alpha
Helix 7	AA7	A	434	436	Right-handed 310
Helix 8	AA8	A	438	449	Right-handed alpha
Helix 9	AA9	B	244	251	Right-handed alpha
Helix 10	AB1	B	262	277	Right-handed alpha
Helix 11	AB2	B	288	302	Right-handed alpha
Helix 12	AB3	B	333	338	Right-handed alpha
Helix 13	AB4	B	339	341	Right-handed 310
Helix 14	AB5	B	345	349	Right-handed 310
Helix 15	AB6	B	421	433	Right-handed alpha
Helix 16	AB7	B	434	436	Right-handed 310
Helix 17	AB8	B	438	452	Right-handed alpha
Helix 18	AB9	C	244	251	Right-handed alpha
Helix 19	AC1	C	262	276	Right-handed alpha
Helix 20	AC2	C	288	302	Right-handed alpha
Helix 21	AC3	C	333	338	Right-handed alpha
Helix 22	AC4	C	339	341	Right-handed 310
Helix 23	AC5	C	421	433	Right-handed alpha
Helix 24	AC6	C	438	450	Right-handed alpha
Helix 25	AC7	D	244	251	Right-handed alpha
Helix 26	AC8	D	262	276	Right-handed alpha
Helix 27	AC9	D	288	302	Right-handed alpha
Helix 28	AD1	D	332	338	Right-handed alpha
Helix 29	AD2	D	345	349	Right-handed 310
Helix 30	AD3	D	421	433	Right-handed alpha
Helix 31	AD4	D	438	449	Right-handed alpha
Helix 32	AD5	E	244	251	Right-handed alpha
Helix 33	AD6	E	262	277	Right-handed alpha
Helix 34	AD7	E	288	301	Right-handed alpha
Helix 35	AD8	E	333	338	Right-handed alpha
Helix 36	AD9	E	339	341	Right-handed 310
Helix 37	AE1	E	345	349	Right-handed 310
Helix 38	AE2	E	421	433	Right-handed alpha
Helix 39	AE3	E	438	451	Right-handed alpha
Helix 40	AE4	F	244	251	Right-handed alpha
Helix 41	AE5	F	252	257	Right-handed 310
Helix 42	AE6	F	262	277	Right-handed alpha
Helix 43	AE7	F	288	302	Right-handed alpha
Helix 44	AE8	F	303	307	Right-handed 310
Helix 45	AE9	F	333	338	Right-handed alpha
Helix 46	AF1	F	421	436	Right-handed alpha
Helix 47	AF2	F	438	450	Right-handed alpha

There are 12 sheets in PDB entry 6PX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	285	first strand
Strand 2	A	234	240	parallel
Strand 3	A	310	315	parallel
Strand 4	A	353	358	parallel
Strand 5	A	399	404	parallel
Strand 6	A	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	285	first strand
Strand 2	B	234	240	parallel
Strand 3	B	309	317	parallel
Strand 4	B	353	360	parallel
Strand 5	B	399	405	parallel
Strand 6	B	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	285	first strand
Strand 2	C	234	240	parallel
Strand 3	C	309	317	parallel
Strand 4	C	353	360	parallel
Strand 5	C	399	404	parallel
Strand 6	C	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	324	first strand
Strand 2	C	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	285	first strand
Strand 2	D	234	240	parallel
Strand 3	D	309	315	parallel
Strand 4	D	353	360	parallel
Strand 5	D	399	406	parallel
Strand 6	D	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	285	first strand
Strand 2	E	235	240	parallel
Strand 3	E	310	315	parallel
Strand 4	E	353	360	parallel
Strand 5	E	404	406	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	285	first strand
Strand 2	E	235	240	parallel
Strand 3	E	310	315	parallel
Strand 4	E	353	360	parallel
Strand 5	E	399	401	parallel
Strand 6	E	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	322	324	first strand
Strand 2	E	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	285	first strand
Strand 2	F	234	240	parallel
Strand 3	F	310	319	parallel
Strand 4	F	322	324	anti-parallel
Strand 5	F	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	285	first strand
Strand 2	F	234	240	parallel
Strand 3	F	310	319	parallel
Strand 4	F	353	360	parallel
Strand 5	F	400	404	parallel
Strand 6	F	467	468	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PX9