Analysis of interatomic Contacts of Structural Units in PDB entry:
6PY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PY2 entry

There are 5 chains in PDB entry 6PY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 0ILE 181
B
 SER 3ARG 189
C
 ALA 1GLY 12
D
 ASN 2PRO 195
E
 GLY 2ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6PY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 76Right-handed alpha
Helix 2
AA2
B
53 62Right-handed alpha
Helix 3
AA3
B
64 73Right-handed alpha
Helix 4
AA4
B
73 78Right-handed alpha
Helix 5
AA5
B
78 87Right-handed alpha
Helix 6
AA6
B
89 93Right-handed 310
Helix 7
AA7
D
81 85Right-handed 310
Helix 8
AA8
D
165 168Right-handed 310
Helix 9
AA9
D
184 189Right-handed alpha
Helix 10
AB1
E
82 86Right-handed 310
Helix 11
AB2
E
117 121Right-handed 310
Helix 12
AB3
E
132 139Right-handed alpha
Helix 13
AB4
E
199 203Right-handed alpha
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There are 18 sheets in PDB entry 6PY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
4 14anti-parallel
Strand 5
B
8 18anti-parallel
Strand 6
B
23 31anti-parallel
Strand 7
B
36 41anti-parallel
Strand 8
B
47 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
144 152anti-parallel
Strand 4
A
131 133anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
144 152anti-parallel
Strand 4
A
137 138anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
117 122anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
173 177anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
155 161anti-parallel
Strand 4
B
148 149anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
171 176anti-parallel
Strand 3
B
184 188anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
23 25anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
106 110parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 50anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
106 110parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
99 102anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 21first strand
Strand 2
D
75 77anti-parallel
Strand 3
D
62 65anti-parallel
Strand 4
D
56 59anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 125first strand
Strand 2
D
133 138anti-parallel
Strand 3
D
169 177anti-parallel
Strand 4
D
155 156anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 125first strand
Strand 2
D
133 138anti-parallel
Strand 3
D
169 177anti-parallel
Strand 4
D
160 164anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
18 23anti-parallel
Strand 3
E
74 78anti-parallel
Strand 4
E
64 67anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
110 115parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
30 36anti-parallel
Strand 5
E
43 48anti-parallel
Strand 6
E
53 55anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
110 115parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
105 106anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 129first strand
Strand 2
E
141 151anti-parallel
Strand 3
E
189 198anti-parallel
Strand 4
E
171 173anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 129first strand
Strand 2
E
141 151anti-parallel
Strand 3
E
189 198anti-parallel
Strand 4
E
178 179anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
165 166first strand
Strand 2
E
156 162anti-parallel
Strand 3
E
208 215anti-parallel
Strand 4
E
234 241anti-parallel
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