Analysis of interatomic Contacts of Structural Units in PDB entry:
6PY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PY8 entry

There are 10 chains in PDB entry 6PY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 13	ALA 107
G	PHE 18	LYS 108
A	T 1	A 16
X	T 1	A 16
D	A 101	C 116
Y	A 101	C 116
C	ARG 11	HIS 439
E	ARG 11	SER 441
F	LYS 1759	VAL 2120
K	LYS 1759	VAL 2120

There are 50 helices in PDB entry 6PY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	15	23	Right-handed alpha
Helix 2	AA2	B	24	26	Right-handed 310
Helix 3	AA3	B	27	37	Right-handed alpha
Helix 4	AA4	B	53	62	Right-handed alpha
Helix 5	AA5	B	63	73	Right-handed alpha
Helix 6	AA6	B	86	95	Right-handed alpha
Helix 7	AA7	B	96	106	Right-handed alpha
Helix 8	AA8	G	31	36	Right-handed alpha
Helix 9	AA9	G	53	62	Right-handed alpha
Helix 10	AB1	G	63	73	Right-handed alpha
Helix 11	AB2	G	86	95	Right-handed alpha
Helix 12	AB3	G	96	108	Right-handed alpha
Helix 13	AB4	C	18	29	Right-handed alpha
Helix 14	AB5	C	64	75	Right-handed alpha
Helix 15	AB6	C	351	354	Right-handed 310
Helix 16	AB7	C	393	397	Right-handed 310
Helix 17	AB8	E	18	29	Right-handed alpha
Helix 18	AB9	E	64	75	Right-handed alpha
Helix 19	AC1	E	351	354	Right-handed 310
Helix 20	AC2	E	393	397	Right-handed 310
Helix 21	AC3	F	1773	1777	Right-handed 310
Helix 22	AC4	F	1884	1892	Right-handed alpha
Helix 23	AC5	F	1906	1916	Right-handed alpha
Helix 24	AC6	F	1931	1939	Right-handed alpha
Helix 25	AC7	F	1941	1951	Right-handed alpha
Helix 26	AC8	F	1964	1972	Right-handed alpha
Helix 27	AC9	F	1974	1983	Right-handed alpha
Helix 28	AD1	F	1998	2006	Right-handed alpha
Helix 29	AD2	F	2012	2018	Right-handed alpha
Helix 30	AD3	F	2031	2039	Right-handed alpha
Helix 31	AD4	F	2041	2051	Right-handed alpha
Helix 32	AD5	F	2064	2072	Right-handed alpha
Helix 33	AD6	F	2074	2084	Right-handed alpha
Helix 34	AD7	F	2097	2105	Right-handed alpha
Helix 35	AD8	F	2107	2117	Right-handed alpha
Helix 36	AD9	K	1773	1777	Right-handed 310
Helix 37	AE1	K	1884	1893	Right-handed alpha
Helix 38	AE2	K	1906	1917	Right-handed alpha
Helix 39	AE3	K	1931	1939	Right-handed alpha
Helix 40	AE4	K	1941	1951	Right-handed alpha
Helix 41	AE5	K	1964	1972	Right-handed alpha
Helix 42	AE6	K	1974	1983	Right-handed alpha
Helix 43	AE7	K	1998	2006	Right-handed alpha
Helix 44	AE8	K	2012	2018	Right-handed alpha
Helix 45	AE9	K	2031	2039	Right-handed alpha
Helix 46	AF1	K	2041	2051	Right-handed alpha
Helix 47	AF2	K	2064	2072	Right-handed alpha
Helix 48	AF3	K	2074	2084	Right-handed alpha
Helix 49	AF4	K	2097	2105	Right-handed alpha
Helix 50	AF5	K	2107	2117	Right-handed alpha

There are 20 sheets in PDB entry 6PY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	206	211	anti-parallel
Strand 3	C	233	238	anti-parallel
Strand 4	C	248	252	anti-parallel
Strand 5	C	270	276	anti-parallel
Strand 6	C	314	324	anti-parallel
Strand 7	C	34	39	anti-parallel
Strand 8	C	58	60	anti-parallel
Strand 9	C	108	110	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	172	177	anti-parallel
Strand 3	C	206	211	anti-parallel
Strand 4	C	223	224	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	206	211	anti-parallel
Strand 3	C	172	177	anti-parallel
Strand 4	C	314	324	anti-parallel
Strand 5	C	34	39	anti-parallel
Strand 6	C	58	60	anti-parallel
Strand 7	C	108	110	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	147	150	parallel
Strand 3	C	124	125	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	85	91	anti-parallel
Strand 3	C	127	133	anti-parallel
Strand 4	C	138	143	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	192	first strand
Strand 2	C	195	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	287	first strand
Strand 2	C	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	408	416	anti-parallel
Strand 4	C	368	372	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	408	416	anti-parallel
Strand 4	C	427	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	349	first strand
Strand 2	C	356	362	anti-parallel
Strand 3	C	386	390	anti-parallel
Strand 4	C	379	383	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	58	60	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	314	324	anti-parallel
Strand 5	E	171	176	anti-parallel
Strand 6	E	206	211	anti-parallel
Strand 7	E	223	224	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	58	60	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	314	324	anti-parallel
Strand 5	E	270	275	anti-parallel
Strand 6	E	248	252	anti-parallel
Strand 7	E	233	238	anti-parallel
Strand 8	E	206	211	anti-parallel
Strand 9	E	223	224	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	138	150	parallel
Strand 3	E	124	133	anti-parallel
Strand 4	E	85	91	anti-parallel
Strand 5	E	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	192	first strand
Strand 2	E	195	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	259	first strand
Strand 2	E	305	307	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	287	first strand
Strand 2	E	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	328	first strand
Strand 2	E	420	422	anti-parallel
Strand 3	E	408	416	anti-parallel
Strand 4	E	368	372	anti-parallel
Strand 5	E	375	376	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	328	first strand
Strand 2	E	420	422	anti-parallel
Strand 3	E	408	416	anti-parallel
Strand 4	E	427	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	349	first strand
Strand 2	E	356	362	anti-parallel
Strand 3	E	386	390	anti-parallel
Strand 4	E	379	383	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PY8