Analysis of interatomic Contacts of Structural Units in PDB entry:
6PYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PYD entry

There are 4 chains in PDB entry 6PYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
VAL 2TYR 219
L
VAL 2ARG 215
A
VAL 2GLU 216
B
ASP 1ASN 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6PYD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
H
86 90Right-handed 310
Helix 2
AA2
H
160 162Right-handed 310
Helix 3
AA3
H
189 194Right-handed 310
Helix 4
AA4
H
205 208Right-handed 310
Helix 5
AA5
L
83 87Right-handed 310
Helix 6
AA6
L
125 130Right-handed alpha
Helix 7
AA7
L
187 193Right-handed alpha
Helix 8
AA8
A
86 90Right-handed 310
Helix 9
AA9
A
160 162Right-handed 310
Helix 10
AB1
A
191 194Right-handed 310
Helix 11
AB2
A
205 208Right-handed 310
Helix 12
AB3
B
83 87Right-handed 310
Helix 13
AB4
B
125 130Right-handed alpha
Helix 14
AB5
B
187 193Right-handed alpha
Back to top of page

There are 22 sheets in PDB entry 6PYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
111 115parallel
Strand 3
H
91 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
111 115parallel
Strand 3
H
91 99anti-parallel
Strand 4
H
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
124 128first strand
Strand 2
H
140 149anti-parallel
Strand 3
H
180 188anti-parallel
Strand 4
H
167 169anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
124 128first strand
Strand 2
H
140 149anti-parallel
Strand 3
H
180 188anti-parallel
Strand 4
H
173 174anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
155 158first strand
Strand 2
H
199 204anti-parallel
Strand 3
H
209 214anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
74 79anti-parallel
Strand 4
L
66 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
106 110parallel
Strand 3
L
88 94anti-parallel
Strand 4
L
37 42anti-parallel
Strand 5
L
49 53anti-parallel
Strand 6
L
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
106 110parallel
Strand 3
L
88 94anti-parallel
Strand 4
L
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
118 122first strand
Strand 2
L
133 143anti-parallel
Strand 3
L
177 186anti-parallel
Strand 4
L
163 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
157 158first strand
Strand 2
L
149 154anti-parallel
Strand 3
L
195 201anti-parallel
Strand 4
L
209 214anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
111 115parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
45 52anti-parallel
Strand 6
A
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
111 115parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
124 128first strand
Strand 2
A
139 149anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
167 169anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
124 128first strand
Strand 2
A
139 149anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
173 174anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
155 158first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
209 214anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
106 110parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
37 42anti-parallel
Strand 5
B
49 53anti-parallel
Strand 6
B
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
106 110parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
118 122first strand
Strand 2
B
133 143anti-parallel
Strand 3
B
177 186anti-parallel
Strand 4
B
163 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
157 158first strand
Strand 2
B
149 154anti-parallel
Strand 3
B
196 201anti-parallel
Strand 4
B
209 213anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il