Analysis of interatomic Contacts of Structural Units in PDB entry:
6PYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PYH entry

There are 3 chains in PDB entry 6PYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	ALA 897
B	THR 4	PRO 63
D	GLU 1	ALA 897

There are 24 helices in PDB entry 6PYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed 310
Helix 2	AA2	A	133	137	Right-handed 310
Helix 3	AA3	A	248	254	Right-handed alpha
Helix 4	AA4	A	315	322	Right-handed 310
Helix 5	AA5	A	340	350	Right-handed alpha
Helix 6	AA6	A	369	373	Right-handed 310
Helix 7	AA7	A	426	438	Right-handed alpha
Helix 8	AA8	A	676	702	Right-handed alpha
Helix 9	AA9	A	853	857	Right-handed alpha
Helix 10	AB1	B	6	19	Right-handed alpha
Helix 11	AB2	B	43	48	Right-handed alpha
Helix 12	AB3	B	55	60	Right-handed 310
Helix 13	AB4	D	12	20	Right-handed 310
Helix 14	AB5	D	133	137	Right-handed 310
Helix 15	AB6	D	144	148	Right-handed 310
Helix 16	AB7	D	248	254	Right-handed alpha
Helix 17	AB8	D	314	320	Right-handed alpha
Helix 18	AB9	D	340	350	Right-handed alpha
Helix 19	AC1	D	369	373	Right-handed 310
Helix 20	AC2	D	385	389	Right-handed 310
Helix 21	AC3	D	428	437	Right-handed alpha
Helix 22	AC4	D	625	631	Right-handed alpha
Helix 23	AC5	D	676	699	Right-handed alpha
Helix 24	AC6	D	853	860	Right-handed alpha

There are 30 sheets in PDB entry 6PYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	50	53	parallel
Strand 3	A	75	80	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	55	58	parallel
Strand 3	A	87	90	parallel
Strand 4	A	111	114	parallel
Strand 5	A	139	140	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	171	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	209	first strand
Strand 2	A	218	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	290	292	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	326	327	parallel
Strand 3	A	354	355	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	312	first strand
Strand 2	A	331	333	parallel
Strand 3	A	359	362	parallel
Strand 4	A	389	394	parallel
Strand 5	A	416	420	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	411	412	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	463	first strand
Strand 2	A	568	569	parallel
Strand 3	A	548	555	anti-parallel
Strand 4	A	493	500	anti-parallel
Strand 5	A	521	524	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	463	first strand
Strand 2	A	568	569	parallel
Strand 3	A	548	555	anti-parallel
Strand 4	A	573	575	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	472	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	536	539	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	594	first strand
Strand 2	A	597	603	anti-parallel
Strand 3	A	758	762	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	753	first strand
Strand 2	A	612	621	anti-parallel
Strand 3	A	770	778	anti-parallel
Strand 4	A	791	793	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	818	820	first strand
Strand 2	A	863	865	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	847	852	first strand
Strand 2	A	833	841	anti-parallel
Strand 3	A	873	876	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	847	852	first strand
Strand 2	A	833	841	anti-parallel
Strand 3	A	879	880	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	24	25	parallel
Strand 3	D	50	51	parallel
Strand 4	D	75	76	parallel
Strand 5	D	105	106	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	28	34	parallel
Strand 3	D	55	60	parallel
Strand 4	D	87	90	parallel
Strand 5	D	111	114	parallel
Strand 6	D	138	139	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	245	247	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	269	first strand
Strand 2	D	272	274	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	284	first strand
Strand 2	D	287	293	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	312	first strand
Strand 2	D	331	333	parallel
Strand 3	D	359	362	parallel
Strand 4	D	391	394	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	378	379	parallel
Strand 3	D	411	412	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	468	first strand
Strand 2	D	476	480	anti-parallel
Strand 3	D	536	539	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	525	first strand
Strand 2	D	493	500	anti-parallel
Strand 3	D	547	555	anti-parallel
Strand 4	D	573	576	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	594	first strand
Strand 2	D	597	603	anti-parallel
Strand 3	D	758	761	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	621	first strand
Strand 2	D	769	778	anti-parallel
Strand 3	D	793	795	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	810	812	first strand
Strand 2	D	819	822	anti-parallel
Strand 3	D	863	864	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	847	851	first strand
Strand 2	D	835	841	anti-parallel
Strand 3	D	870	879	anti-parallel
Strand 4	D	891	895	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PYH