Analysis of interatomic Contacts of Structural Units in PDB entry:
6PYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PYO entry

There are 2 chains in PDB entry 6PYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 299ALA 459
B
 GLY 303ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6PYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
314 319Right-handed 310
Helix 2
AA2
A
321 336Right-handed alpha
Helix 3
AA3
A
364 373Right-handed alpha
Helix 4
AA4
A
384 398Right-handed alpha
Helix 5
AA5
A
417 420Right-handed 310
Helix 6
AA6
A
421 429Right-handed alpha
Helix 7
AA7
A
442 451Right-handed alpha
Helix 8
AA8
B
314 319Right-handed 310
Helix 9
AA9
B
321 336Right-handed alpha
Helix 10
AB1
B
364 373Right-handed alpha
Helix 11
AB2
B
384 398Right-handed alpha
Helix 12
AB3
B
417 420Right-handed 310
Helix 13
AB4
B
421 429Right-handed alpha
Helix 14
AB5
B
442 453Right-handed alpha
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There are 2 sheets in PDB entry 6PYO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 361first strand
Strand 2
A
343 349anti-parallel
Strand 3
A
306 312parallel
Strand 4
A
406 411parallel
Strand 5
A
431 436parallel
Strand 6
A
456 457parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 361first strand
Strand 2
B
343 349anti-parallel
Strand 3
B
306 312parallel
Strand 4
B
406 411parallel
Strand 5
B
431 436parallel
Strand 6
B
456 457parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il