Analysis of interatomic Contacts of Structural Units in PDB entry:
6PYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PYP entry

There are 2 chains in PDB entry 6PYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 349
B
 ALA 2MET 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6PYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 29Right-handed alpha
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
78 84Right-handed alpha
Helix 4
AA4
A
94 106Right-handed alpha
Helix 5
AA5
A
131 141Right-handed alpha
Helix 6
AA6
A
152 158Right-handed alpha
Helix 7
AA7
A
170 182Right-handed alpha
Helix 8
AA8
A
193 217Right-handed alpha
Helix 9
AA9
A
220 243Right-handed alpha
Helix 10
AB1
A
248 254Right-handed 310
Helix 11
AB2
A
257 267Right-handed alpha
Helix 12
AB3
A
268 281Right-handed alpha
Helix 13
AB4
A
283 292Right-handed alpha
Helix 14
AB5
A
297 314Right-handed alpha
Helix 15
AB6
A
315 318Right-handed 310
Helix 16
AB7
A
319 331Right-handed alpha
Helix 17
AB8
A
334 343Right-handed 310
Helix 18
AB9
A
345 349Right-handed 310
Helix 19
AC1
B
12 29Right-handed alpha
Helix 20
AC2
B
50 58Right-handed alpha
Helix 21
AC3
B
78 84Right-handed alpha
Helix 22
AC4
B
94 106Right-handed alpha
Helix 23
AC5
B
131 141Right-handed alpha
Helix 24
AC6
B
152 158Right-handed alpha
Helix 25
AC7
B
170 182Right-handed alpha
Helix 26
AC8
B
193 217Right-handed alpha
Helix 27
AC9
B
220 243Right-handed alpha
Helix 28
AD1
B
248 254Right-handed 310
Helix 29
AD2
B
257 267Right-handed alpha
Helix 30
AD3
B
268 281Right-handed alpha
Helix 31
AD4
B
284 290Right-handed alpha
Helix 32
AD5
B
298 314Right-handed alpha
Helix 33
AD6
B
315 318Right-handed 310
Helix 34
AD7
B
319 331Right-handed alpha
Helix 35
AD8
B
334 338Right-handed 310
Helix 36
AD9
B
339 343Right-handed 310
Helix 37
AE1
B
345 349Right-handed 310
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There are 5 sheets in PDB entry 6PYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
32 39parallel
Strand 3
A
4 9parallel
Strand 4
A
88 91parallel
Strand 5
A
114 117parallel
Strand 6
A
144 148parallel
Strand 7
A
162 167anti-parallel
Strand 8
A
186 191parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
48 49anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
128 130anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
36 39parallel
Strand 3
B
6 9parallel
Strand 4
B
88 91parallel
Strand 5
B
114 117parallel
Strand 6
B
144 148parallel
Strand 7
B
162 167anti-parallel
Strand 8
B
186 191parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
48 49anti-parallel
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