Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PZB entry

There is 1 chain in PDB entry 6PZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	MET 1	VAL 1578

There are 50 helices in PDB entry 6PZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	26	52	Right-handed alpha
Helix 2	AA2	G	71	98	Right-handed alpha
Helix 3	AA3	G	108	130	Right-handed alpha
Helix 4	AA4	G	132	135	Right-handed 310
Helix 5	AA5	G	136	160	Right-handed alpha
Helix 6	AA6	G	166	194	Right-handed alpha
Helix 7	AA7	G	208	213	Right-handed alpha
Helix 8	AA8	G	223	230	Right-handed alpha
Helix 9	AA9	G	231	241	Right-handed alpha
Helix 10	AB1	G	254	257	Right-handed 310
Helix 11	AB2	G	258	276	Right-handed alpha
Helix 12	AB3	G	284	329	Right-handed alpha
Helix 13	AB4	G	347	352	Right-handed alpha
Helix 14	AB5	G	355	400	Right-handed alpha
Helix 15	AB6	G	413	435	Right-handed alpha
Helix 16	AB7	G	436	457	Right-handed alpha
Helix 17	AB8	G	466	469	Right-handed 310
Helix 18	AB9	G	470	505	Right-handed alpha
Helix 19	AC1	G	505	512	Right-handed alpha
Helix 20	AC2	G	515	548	Right-handed alpha
Helix 21	AC3	G	549	564	Right-handed alpha
Helix 22	AC4	G	577	615	Right-handed alpha
Helix 23	AC5	G	718	727	Right-handed alpha
Helix 24	AC6	G	785	790	Right-handed alpha
Helix 25	AC7	G	795	806	Right-handed alpha
Helix 26	AC8	G	808	815	Right-handed alpha
Helix 27	AC9	G	831	846	Right-handed alpha
Helix 28	AD1	G	862	881	Right-handed alpha
Helix 29	AD2	G	913	918	Right-handed alpha
Helix 30	AD3	G	922	927	Right-handed alpha
Helix 31	AD4	G	996	1009	Right-handed alpha
Helix 32	AD5	G	1009	1041	Right-handed alpha
Helix 33	AD6	G	1070	1107	Right-handed alpha
Helix 34	AD7	G	1109	1116	Right-handed alpha
Helix 35	AD8	G	1117	1135	Right-handed alpha
Helix 36	AD9	G	1135	1161	Right-handed alpha
Helix 37	AE1	G	1164	1210	Right-handed alpha
Helix 38	AE2	G	1210	1218	Right-handed alpha
Helix 39	AE3	G	1219	1273	Right-handed alpha
Helix 40	AE4	G	1278	1321	Right-handed alpha
Helix 41	AE5	G	1385	1392	Right-handed alpha
Helix 42	AE6	G	1414	1421	Right-handed alpha
Helix 43	AE7	G	1435	1441	Right-handed alpha
Helix 44	AE8	G	1447	1458	Right-handed alpha
Helix 45	AE9	G	1460	1465	Right-handed alpha
Helix 46	AF1	G	1484	1498	Right-handed alpha
Helix 47	AF2	G	1512	1530	Right-handed alpha
Helix 48	AF3	G	1539	1543	Right-handed 310
Helix 49	AF4	G	1564	1570	Right-handed alpha
Helix 50	AF5	G	1571	1576	Right-handed alpha

There are 6 sheets in PDB entry 6PZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	701	703	first strand
Strand 2	G	679	681	anti-parallel
Strand 3	G	737	738	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	696	697	first strand
Strand 2	G	685	687	anti-parallel
Strand 3	G	731	732	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	850	854	first strand
Strand 2	G	883	887	parallel
Strand 3	G	708	713	parallel
Strand 4	G	901	904	parallel
Strand 5	G	907	911	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1347	1348	first strand
Strand 2	G	1402	1405	anti-parallel
Strand 3	G	1408	1409	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1352	1353	first strand
Strand 2	G	1397	1398	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1549	1551	first strand
Strand 2	G	1559	1561	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZB