Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PZC entry

There is 1 chain in PDB entry 6PZC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	VAL 222	ALA 1575

There are 45 helices in PDB entry 6PZC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	223	230	Right-handed alpha
Helix 2	AA2	H	231	243	Right-handed alpha
Helix 3	AA3	H	258	274	Right-handed alpha
Helix 4	AA4	H	283	327	Right-handed alpha
Helix 5	AA5	H	347	352	Right-handed alpha
Helix 6	AA6	H	354	400	Right-handed alpha
Helix 7	AA7	H	413	423	Right-handed alpha
Helix 8	AA8	H	423	454	Right-handed alpha
Helix 9	AA9	H	457	471	Right-handed alpha
Helix 10	AB1	H	471	505	Right-handed alpha
Helix 11	AB2	H	505	512	Right-handed alpha
Helix 12	AB3	H	514	564	Right-handed alpha
Helix 13	AB4	H	572	591	Right-handed alpha
Helix 14	AB5	H	592	615	Right-handed alpha
Helix 15	AB6	H	720	728	Right-handed alpha
Helix 16	AB7	H	783	790	Right-handed alpha
Helix 17	AB8	H	795	807	Right-handed alpha
Helix 18	AB9	H	808	815	Right-handed alpha
Helix 19	AC1	H	817	821	Right-handed 310
Helix 20	AC2	H	834	846	Right-handed alpha
Helix 21	AC3	H	855	860	Right-handed alpha
Helix 22	AC4	H	861	879	Right-handed alpha
Helix 23	AC5	H	918	923	Right-handed alpha
Helix 24	AC6	H	996	1004	Right-handed alpha
Helix 25	AC7	H	1009	1044	Right-handed alpha
Helix 26	AC8	H	1060	1107	Right-handed alpha
Helix 27	AC9	H	1109	1116	Right-handed alpha
Helix 28	AD1	H	1117	1135	Right-handed alpha
Helix 29	AD2	H	1136	1161	Right-handed alpha
Helix 30	AD3	H	1164	1195	Right-handed alpha
Helix 31	AD4	H	1196	1210	Right-handed alpha
Helix 32	AD5	H	1210	1218	Right-handed alpha
Helix 33	AD6	H	1219	1267	Right-handed alpha
Helix 34	AD7	H	1268	1271	Right-handed 310
Helix 35	AD8	H	1278	1289	Right-handed alpha
Helix 36	AD9	H	1290	1313	Right-handed alpha
Helix 37	AE1	H	1313	1319	Right-handed alpha
Helix 38	AE2	H	1414	1419	Right-handed alpha
Helix 39	AE3	H	1436	1441	Right-handed alpha
Helix 40	AE4	H	1450	1458	Right-handed alpha
Helix 41	AE5	H	1469	1472	Right-handed 310
Helix 42	AE6	H	1476	1479	Right-handed 310
Helix 43	AE7	H	1485	1498	Right-handed alpha
Helix 44	AE8	H	1513	1526	Right-handed alpha
Helix 45	AE9	H	1539	1546	Right-handed 310

There are 5 sheets in PDB entry 6PZC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	696	703	first strand
Strand 2	H	679	686	anti-parallel
Strand 3	H	736	738	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1365	1368	first strand
Strand 2	H	1346	1353	anti-parallel
Strand 3	H	1397	1402	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1376	1377	first strand
Strand 2	H	1535	1536	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1404	1405	first strand
Strand 2	H	1408	1409	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1434	1435	first strand
Strand 2	H	1474	1475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PZC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZC