Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PZJ entry

There is 1 chain in PDB entry 6PZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 37SER 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6PZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 72Right-handed alpha
Helix 2
AA2
A
77 92Right-handed alpha
Helix 3
AA3
A
110 115Right-handed 310
Helix 4
AA4
A
151 153Right-handed 310
Helix 5
AA5
A
154 164Right-handed alpha
Helix 6
AA6
A
207 214Right-handed alpha
Helix 7
AA7
A
241 245Right-handed 310
Helix 8
AA8
A
251 263Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6PZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
196 206anti-parallel
Strand 5
A
180 193anti-parallel
Strand 6
A
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
196 206anti-parallel
Strand 5
A
180 193anti-parallel
Strand 6
A
172 176anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
225 229anti-parallel
Strand 3
A
291 298anti-parallel
Strand 4
A
275 282anti-parallel
Strand 5
A
268 271anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il