Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PZM entry

There are 4 chains in PDB entry 6PZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5PHE 244
B
 LYS 6PHE 244
C
 MET 1PHE 244
D
 ARG 5PHE 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6PZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
103 129Right-handed alpha
Helix 6
AA6
A
140 145Right-handed 310
Helix 7
AA7
A
150 171Right-handed alpha
Helix 8
AA8
A
188 194Right-handed alpha
Helix 9
AA9
A
196 207Right-handed alpha
Helix 10
AB1
A
214 227Right-handed alpha
Helix 11
AB2
A
228 231Right-handed 310
Helix 12
AB3
B
15 28Right-handed alpha
Helix 13
AB4
B
39 53Right-handed alpha
Helix 14
AB5
B
66 82Right-handed alpha
Helix 15
AB6
B
100 102Right-handed 310
Helix 16
AB7
B
103 129Right-handed alpha
Helix 17
AB8
B
140 145Right-handed 310
Helix 18
AB9
B
150 171Right-handed alpha
Helix 19
AC1
B
188 194Right-handed alpha
Helix 20
AC2
B
196 205Right-handed alpha
Helix 21
AC3
B
214 227Right-handed alpha
Helix 22
AC4
B
228 231Right-handed 310
Helix 23
AC5
C
15 28Right-handed alpha
Helix 24
AC6
C
39 53Right-handed alpha
Helix 25
AC7
C
66 80Right-handed alpha
Helix 26
AC8
C
100 102Right-handed 310
Helix 27
AC9
C
103 129Right-handed alpha
Helix 28
AD1
C
140 145Right-handed 310
Helix 29
AD2
C
150 171Right-handed alpha
Helix 30
AD3
C
188 194Right-handed alpha
Helix 31
AD4
C
196 207Right-handed alpha
Helix 32
AD5
C
214 227Right-handed alpha
Helix 33
AD6
C
228 231Right-handed 310
Helix 34
AD7
D
15 28Right-handed alpha
Helix 35
AD8
D
39 53Right-handed alpha
Helix 36
AD9
D
66 80Right-handed alpha
Helix 37
AE1
D
100 102Right-handed 310
Helix 38
AE2
D
103 129Right-handed alpha
Helix 39
AE3
D
140 145Right-handed 310
Helix 40
AE4
D
150 171Right-handed alpha
Helix 41
AE5
D
188 194Right-handed alpha
Helix 42
AE6
D
196 205Right-handed alpha
Helix 43
AE7
D
214 227Right-handed alpha
Helix 44
AE8
D
228 231Right-handed 310
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There are 4 sheets in PDB entry 6PZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
86 89parallel
Strand 5
A
134 138parallel
Strand 6
A
177 183parallel
Strand 7
A
237 240parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
31 36parallel
Strand 3
B
7 11parallel
Strand 4
B
86 89parallel
Strand 5
B
134 138parallel
Strand 6
B
177 183parallel
Strand 7
B
237 240parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
31 36parallel
Strand 3
C
7 11parallel
Strand 4
C
86 89parallel
Strand 5
C
134 138parallel
Strand 6
C
177 183parallel
Strand 7
C
237 240parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
31 36parallel
Strand 3
D
7 11parallel
Strand 4
D
86 89parallel
Strand 5
D
134 138parallel
Strand 6
D
177 183parallel
Strand 7
D
237 240parallel
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