Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PZV entry

There are 10 chains in PDB entry 6PZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0CYS 76
B
 MET 1CYS 76
C
 SER 348VAL 588
D
 ARG 2ARG 8
D
 SER 10GLN 19
E
 SER 0CYS 76
F
 MET 1CYS 76
G
 SER 348THR 589
H
 ARG 2ARG 8
H
 SER 10LEU 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6PZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
B
22 35Right-handed alpha
Helix 4
AA4
B
37 39Right-handed 310
Helix 5
AA5
C
374 379Right-handed alpha
Helix 6
AA6
C
381 385Right-handed 310
Helix 7
AA7
C
493 517Right-handed alpha
Helix 8
AA8
C
521 532Right-handed alpha
Helix 9
AA9
C
535 539Right-handed 310
Helix 10
AB1
C
544 550Right-handed alpha
Helix 11
AB2
C
551 565Right-handed alpha
Helix 12
AB3
C
576 587Right-handed alpha
Helix 13
AB4
E
22 35Right-handed alpha
Helix 14
AB5
E
37 39Right-handed 310
Helix 15
AB6
F
22 35Right-handed alpha
Helix 16
AB7
F
37 39Right-handed 310
Helix 17
AB8
G
374 380Right-handed alpha
Helix 18
AB9
G
381 385Right-handed 310
Helix 19
AC1
G
493 517Right-handed alpha
Helix 20
AC2
G
521 532Right-handed alpha
Helix 21
AC3
G
535 539Right-handed 310
Helix 22
AC4
G
544 551Right-handed alpha
Helix 23
AC5
G
551 565Right-handed alpha
Helix 24
AC6
G
576 587Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6PZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
1 7anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
451 456first strand
Strand 2
C
432 438anti-parallel
Strand 3
C
402 411anti-parallel
Strand 4
C
483 486parallel
Strand 5
C
474 478anti-parallel
Strand 6
C
461 465anti-parallel
Strand 7
D
10 14anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 17first strand
Strand 2
E
1 7anti-parallel
Strand 3
E
66 71parallel
Strand 4
E
41 45anti-parallel
Strand 5
E
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 7anti-parallel
Strand 3
F
65 71parallel
Strand 4
F
41 45anti-parallel
Strand 5
F
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
451 456first strand
Strand 2
G
432 438anti-parallel
Strand 3
G
402 411anti-parallel
Strand 4
G
483 486parallel
Strand 5
G
474 478anti-parallel
Strand 6
G
461 465anti-parallel
Strand 7
H
10 14anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il