Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PZW entry

There are 12 chains in PDB entry 6PZW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 82	LEU 468
I	VAL 3	LEU 106
K	GLN 1	VAL 111
D	ARG 82	LEU 468
E	VAL 3	LEU 106
F	GLN 1	VAL 111
G	VAL 3	LEU 106
J	GLN 1	VAL 111
C	ARG 82	LEU 468
B	ARG 82	LEU 468
L	VAL 3	LEU 106
H	GLN 1	VAL 111

There are 32 helices in PDB entry 6PZW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	109	Right-handed alpha
Helix 2	AA2	A	110	112	Right-handed 310
Helix 3	AA3	A	142	146	Right-handed 310
Helix 4	AA4	A	463	468	Right-handed 310
Helix 5	AA5	I	79	83	Right-handed 310
Helix 6	AA6	K	28	30	Right-handed 310
Helix 7	AA7	K	61	64	Right-handed 310
Helix 8	AA8	K	83	87	Right-handed 310
Helix 9	AA9	D	104	109	Right-handed alpha
Helix 10	AB1	D	110	112	Right-handed 310
Helix 11	AB2	D	142	146	Right-handed 310
Helix 12	AB3	D	463	468	Right-handed 310
Helix 13	AB4	E	79	83	Right-handed 310
Helix 14	AB5	F	28	30	Right-handed 310
Helix 15	AB6	F	61	64	Right-handed 310
Helix 16	AB7	F	83	87	Right-handed 310
Helix 17	AB8	G	79	83	Right-handed 310
Helix 18	AB9	J	28	30	Right-handed 310
Helix 19	AC1	J	61	64	Right-handed 310
Helix 20	AC2	J	83	87	Right-handed 310
Helix 21	AC3	C	104	109	Right-handed alpha
Helix 22	AC4	C	110	112	Right-handed 310
Helix 23	AC5	C	142	146	Right-handed 310
Helix 24	AC6	C	463	468	Right-handed 310
Helix 25	AC7	B	104	109	Right-handed alpha
Helix 26	AC8	B	110	112	Right-handed 310
Helix 27	AC9	B	142	146	Right-handed 310
Helix 28	AD1	B	463	468	Right-handed 310
Helix 29	AD2	L	79	83	Right-handed 310
Helix 30	AD3	H	28	30	Right-handed 310
Helix 31	AD4	H	61	64	Right-handed 310
Helix 32	AD5	H	83	87	Right-handed 310

There are 52 sheets in PDB entry 6PZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	417	418	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	439	449	anti-parallel
Strand 3	A	420	429	anti-parallel
Strand 4	A	407	411	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	125	first strand
Strand 2	A	128	139	anti-parallel
Strand 3	A	157	162	anti-parallel
Strand 4	A	172	176	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	184	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	202	207	anti-parallel
Strand 4	A	210	216	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	244	first strand
Strand 2	A	250	258	anti-parallel
Strand 3	A	261	267	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	283	first strand
Strand 2	A	286	292	anti-parallel
Strand 3	A	301	306	anti-parallel
Strand 4	A	311	316	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	361	364	anti-parallel
Strand 3	A	372	378	anti-parallel
Strand 4	A	393	403	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	84	92	anti-parallel
Strand 4	I	34	38	anti-parallel
Strand 5	I	45	48	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	84	92	anti-parallel
Strand 4	I	95	98	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	62	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	107	110	parallel
Strand 3	K	88	98	anti-parallel
Strand 4	K	32	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	57	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	107	110	parallel
Strand 3	K	88	98	anti-parallel
Strand 4	K	100	103	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	417	418	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	102	first strand
Strand 2	D	439	449	anti-parallel
Strand 3	D	420	429	anti-parallel
Strand 4	D	407	411	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	125	first strand
Strand 2	D	128	139	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	172	176	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	184	first strand
Strand 2	D	189	195	anti-parallel
Strand 3	D	202	207	anti-parallel
Strand 4	D	210	216	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	244	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	261	267	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	283	first strand
Strand 2	D	286	292	anti-parallel
Strand 3	D	301	306	anti-parallel
Strand 4	D	311	316	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	361	364	anti-parallel
Strand 3	D	372	378	anti-parallel
Strand 4	D	393	403	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	92	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	92	anti-parallel
Strand 4	E	95	98	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	70	75	anti-parallel
Strand 3	E	62	67	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	107	110	parallel
Strand 3	F	88	98	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	107	110	parallel
Strand 3	F	88	98	anti-parallel
Strand 4	F	100	103	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	84	92	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	45	48	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	84	92	anti-parallel
Strand 4	G	95	98	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	70	75	anti-parallel
Strand 3	G	62	67	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	88	98	anti-parallel
Strand 4	J	32	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	88	98	anti-parallel
Strand 4	J	100	103	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	417	418	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	102	first strand
Strand 2	C	439	449	anti-parallel
Strand 3	C	420	429	anti-parallel
Strand 4	C	407	411	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	125	first strand
Strand 2	C	128	139	anti-parallel
Strand 3	C	157	162	anti-parallel
Strand 4	C	172	176	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	184	first strand
Strand 2	C	189	195	anti-parallel
Strand 3	C	202	207	anti-parallel
Strand 4	C	210	216	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	244	first strand
Strand 2	C	250	258	anti-parallel
Strand 3	C	261	267	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	283	first strand
Strand 2	C	286	292	anti-parallel
Strand 3	C	301	306	anti-parallel
Strand 4	C	311	316	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	361	364	anti-parallel
Strand 3	C	372	378	anti-parallel
Strand 4	C	393	403	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	417	418	parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	439	449	anti-parallel
Strand 3	B	420	429	anti-parallel
Strand 4	B	407	411	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	125	first strand
Strand 2	B	128	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	172	176	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	184	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	202	207	anti-parallel
Strand 4	B	210	216	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	244	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	261	267	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	283	first strand
Strand 2	B	286	292	anti-parallel
Strand 3	B	301	306	anti-parallel
Strand 4	B	311	316	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	361	364	anti-parallel
Strand 3	B	372	378	anti-parallel
Strand 4	B	393	403	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	100	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PZW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PZW