Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q0B entry

There are 5 chains in PDB entry 6Q0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ARG 70TYR 280
2
 ARG 12PRO 269
3
 GLY 1ILE 231
4
 GLY 2ASN 69
7
 UNK 101CYS 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6Q0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
72 75Right-handed 310
Helix 2
AA2
1
76 82Right-handed alpha
Helix 3
AA3
1
115 124Right-handed alpha
Helix 4
AA4
1
172 176Right-handed 310
Helix 5
AA5
2
27 29Right-handed 310
Helix 6
AA6
2
35 37Right-handed 310
Helix 7
AA7
2
83 87Right-handed 310
Helix 8
AA8
2
89 99Right-handed alpha
Helix 9
AA9
2
144 149Right-handed 310
Helix 10
AB1
2
186 193Right-handed 310
Helix 11
AB2
3
43 48Right-handed alpha
Helix 12
AB3
3
64 69Right-handed 310
Helix 13
AB4
3
92 97Right-handed alpha
Helix 14
AB5
3
98 106Right-handed alpha
Helix 15
AB6
3
144 151Right-handed alpha
Helix 16
AB7
4
35 39Right-handed 310
Helix 17
AB8
4
50 55Right-handed alpha
Helix 18
AB9
7
226 233Right-handed alpha
Helix 19
AC1
7
287 294Right-handed alpha
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There are 20 sheets in PDB entry 6Q0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
85 93first strand
Strand 2
1
253 271anti-parallel
Strand 3
1
125 142anti-parallel
Strand 4
1
205 206anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
192 194first strand
Strand 2
1
125 142anti-parallel
Strand 3
1
253 271anti-parallel
Strand 4
3
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
105 109first strand
Strand 2
1
239 244anti-parallel
Strand 3
1
154 160anti-parallel
Strand 4
1
182 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
31 33first strand
Strand 2
2
205 210parallel
Strand 3
2
102 111anti-parallel
Strand 4
2
248 251anti-parallel
Strand 5
2
69 70anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
31 33first strand
Strand 2
2
205 210parallel
Strand 3
2
102 111anti-parallel
Strand 4
2
254 260anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
155 156first strand
Strand 2
2
78 82anti-parallel
Strand 3
2
227 239anti-parallel
Strand 4
2
118 126anti-parallel
Strand 5
2
195 199anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
210 216anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
163 167anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
107 110anti-parallel
Strand 3
3
222 225anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
152 157first strand
Strand 2
3
129 134anti-parallel
Strand 3
3
191 194anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
4 7first strand
Strand 2
4
26 29anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
123 124first strand
Strand 2
7
174 175anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
221 222first strand
Strand 2
7
235 240anti-parallel
Strand 3
7
281 286anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
252 253first strand
Strand 2
7
299 301anti-parallel
Strand 3
7
310 311anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
405 406first strand
Strand 2
7
421 423anti-parallel
Strand 3
7
478 480anti-parallel
Strand 4
7
472 473anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
437 438first strand
Strand 2
7
446 447anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
449 451first strand
Strand 2
7
458 460anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
524 527first strand
Strand 2
7
544 547anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
549 550first strand
Strand 2
7
579 580anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
555 556first strand
Strand 2
7
599 603anti-parallel
Strand 3
7
612 614anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il