Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q0O entry

There are 3 chains in PDB entry 6Q0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 50	PHE 264
B	SER 2	THR 212
Z	GLN 1	SER 232

There are 12 helices in PDB entry 6Q0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	67	Right-handed alpha
Helix 2	AA2	A	101	109	Right-handed alpha
Helix 3	AA3	A	122	127	Right-handed alpha
Helix 4	AA4	A	187	196	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	78	82	Right-handed 310
Helix 7	AA7	B	124	130	Right-handed alpha
Helix 8	AA8	B	184	191	Right-handed alpha
Helix 9	AA9	Z	64	66	Right-handed 310
Helix 10	AB1	Z	87	91	Right-handed 310
Helix 11	AB2	Z	109	113	Right-handed 310
Helix 12	AB3	Z	204	206	Right-handed 310

There are 17 sheets in PDB entry 6Q0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	83	84	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	119	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	119	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	229	237	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	145	146	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	61	65	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	104	108	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	47	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	104	108	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	98	100	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	133	140	anti-parallel
Strand 3	B	175	183	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	133	140	anti-parallel
Strand 3	B	175	183	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	148	153	anti-parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	203	209	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	3	7	first strand
Strand 2	Z	17	25	anti-parallel
Strand 3	Z	78	84	anti-parallel
Strand 4	Z	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	11	12	first strand
Strand 2	Z	124	128	parallel
Strand 3	Z	92	99	anti-parallel
Strand 4	Z	34	40	anti-parallel
Strand 5	Z	47	53	anti-parallel
Strand 6	Z	57	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	11	12	first strand
Strand 2	Z	124	128	parallel
Strand 3	Z	92	99	anti-parallel
Strand 4	Z	119	120	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	137	141	first strand
Strand 2	Z	152	162	anti-parallel
Strand 3	Z	193	202	anti-parallel
Strand 4	Z	180	182	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	137	141	first strand
Strand 2	Z	152	162	anti-parallel
Strand 3	Z	193	202	anti-parallel
Strand 4	Z	186	187	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	168	171	first strand
Strand 2	Z	212	217	anti-parallel
Strand 3	Z	222	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q0O