Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q0T entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 6Q0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 449ALA 728
A
 GLU 730SER 732
B
 ASP 449ALA 728
B
 GLU 730GLU 730
C
 ASP 43ILE 379
X
 ASP 2SER 230
Y
 ASP 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6Q0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
578 580Right-handed 310
Helix 5
AA5
A
586 588Right-handed 310
Helix 6
AA6
A
616 620Right-handed 310
Helix 7
AA7
A
621 627Right-handed alpha
Helix 8
AA8
A
634 652Right-handed alpha
Helix 9
AA9
A
661 671Right-handed alpha
Helix 10
AB1
A
677 681Right-handed 310
Helix 11
AB2
A
686 697Right-handed alpha
Helix 12
AB3
A
700 704Right-handed 310
Helix 13
AB4
A
706 721Right-handed alpha
Helix 14
AB5
B
491 506Right-handed alpha
Helix 15
AB6
B
536 543Right-handed alpha
Helix 16
AB7
B
549 570Right-handed alpha
Helix 17
AB8
B
578 580Right-handed 310
Helix 18
AB9
B
586 588Right-handed 310
Helix 19
AC1
B
616 620Right-handed 310
Helix 20
AC2
B
621 627Right-handed alpha
Helix 21
AC3
B
634 652Right-handed alpha
Helix 22
AC4
B
661 671Right-handed alpha
Helix 23
AC5
B
677 681Right-handed 310
Helix 24
AC6
B
686 697Right-handed alpha
Helix 25
AC7
B
700 704Right-handed 310
Helix 26
AC8
B
706 719Right-handed alpha
Helix 27
AC9
C
44 60Right-handed alpha
Helix 28
AD1
C
64 66Right-handed 310
Helix 29
AD2
C
104 116Right-handed alpha
Helix 30
AD3
C
117 121Right-handed 310
Helix 31
AD4
C
151 159Right-handed alpha
Helix 32
AD5
C
162 185Right-handed alpha
Helix 33
AD6
C
192 194Right-handed 310
Helix 34
AD7
C
212 219Right-handed alpha
Helix 35
AD8
C
231 236Right-handed alpha
Helix 36
AD9
C
241 259Right-handed alpha
Helix 37
AE1
C
267 274Right-handed alpha
Helix 38
AE2
C
309 320Right-handed alpha
Helix 39
AE3
C
331 342Right-handed alpha
Helix 40
AE4
C
345 349Right-handed 310
Helix 41
AE5
C
351 357Right-handed alpha
Helix 42
AE6
C
358 367Right-handed alpha
Helix 43
AE7
C
370 378Right-handed alpha
Helix 44
AE8
X
3 16Right-handed alpha
Helix 45
AE9
X
20 31Right-handed alpha
Helix 46
AF1
X
38 70Right-handed alpha
Helix 47
AF2
X
73 102Right-handed alpha
Helix 48
AF3
X
111 133Right-handed alpha
Helix 49
AF4
X
137 160Right-handed alpha
Helix 50
AF5
X
164 181Right-handed alpha
Helix 51
AF6
X
184 202Right-handed alpha
Helix 52
AF7
X
207 210Right-handed 310
Helix 53
AF8
X
211 229Right-handed alpha
Helix 54
AF9
Y
3 16Right-handed alpha
Helix 55
AG1
Y
20 31Right-handed alpha
Helix 56
AG2
Y
38 70Right-handed alpha
Helix 57
AG3
Y
73 104Right-handed alpha
Helix 58
AG4
Y
111 133Right-handed alpha
Helix 59
AG5
Y
136 160Right-handed alpha
Helix 60
AG6
Y
164 181Right-handed alpha
Helix 61
AG7
Y
185 202Right-handed alpha
Helix 62
AG8
Y
202 210Right-handed alpha
Helix 63
AG9
Y
211 229Right-handed alpha
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There are 8 sheets in PDB entry 6Q0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
599 600anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 464first strand
Strand 2
B
470 475anti-parallel
Strand 3
B
479 484anti-parallel
Strand 4
B
526 530anti-parallel
Strand 5
B
516 520anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
572 573first strand
Strand 2
B
599 600anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 585first strand
Strand 2
B
589 592anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 76first strand
Strand 2
C
80 87anti-parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
138 144anti-parallel
Strand 5
C
129 135anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
C
196 198anti-parallel
Strand 3
C
204 206anti-parallel
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