Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q0Y entry

There is 1 chain in PDB entry 6Q0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6Q0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
47 61Right-handed alpha
Helix 4
AA4
A
84 91Right-handed alpha
Helix 5
AA5
A
92 96Right-handed 310
Helix 6
AA6
A
97 106Right-handed alpha
Helix 7
AA7
A
123 133Right-handed alpha
Helix 8
AA8
A
162 174Right-handed alpha
Helix 9
AA9
A
188 201Right-handed alpha
Helix 10
AB1
A
231 246Right-handed alpha
Helix 11
AB2
A
255 258Right-handed 310
Helix 12
AB3
A
259 269Right-handed alpha
Helix 13
AB4
A
302 304Right-handed 310
Helix 14
AB5
A
305 314Right-handed alpha
Helix 15
AB6
A
333 340Right-handed alpha
Helix 16
AB7
A
368 382Right-handed alpha
Helix 17
AB8
A
391 396Right-handed alpha
Helix 18
AB9
A
400 408Right-handed alpha
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There are 6 sheets in PDB entry 6Q0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
385 389parallel
Strand 3
A
3 7anti-parallel
Strand 4
A
411 415anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
248 252parallel
Strand 3
A
279 283anti-parallel
Strand 4
A
272 275anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
70 74anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
225 227parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
107 111parallel
Strand 3
A
143 147anti-parallel
Strand 4
A
136 140anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
179 183parallel
Strand 3
A
212 216anti-parallel
Strand 4
A
205 206anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
319 324parallel
Strand 3
A
350 354anti-parallel
Strand 4
A
344 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il