Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q13 entry

There are 4 chains in PDB entry 6Q13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PHE 331
B	ALA 1	PHE 331
C	ALA 1	PHE 331
D	ALA 1	LYS 317

There are 60 helices in PDB entry 6Q13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	8	Right-handed alpha
Helix 2	AA2	A	28	41	Right-handed alpha
Helix 3	AA3	A	53	67	Right-handed alpha
Helix 4	AA4	A	68	71	Right-handed 310
Helix 5	AA5	A	81	86	Right-handed 310
Helix 6	AA6	A	104	127	Right-handed alpha
Helix 7	AA7	A	138	151	Right-handed alpha
Helix 8	AA8	A	153	155	Right-handed 310
Helix 9	AA9	A	162	178	Right-handed alpha
Helix 10	AB1	A	180	182	Right-handed 310
Helix 11	AB2	A	192	196	Right-handed 310
Helix 12	AB3	A	200	202	Right-handed 310
Helix 13	AB4	A	210	214	Right-handed alpha
Helix 14	AB5	A	226	245	Right-handed alpha
Helix 15	AB6	A	248	264	Right-handed alpha
Helix 16	AB7	A	308	327	Right-handed alpha
Helix 17	AB8	B	2	8	Right-handed alpha
Helix 18	AB9	B	28	41	Right-handed alpha
Helix 19	AC1	B	53	67	Right-handed alpha
Helix 20	AC2	B	68	71	Right-handed 310
Helix 21	AC3	B	81	86	Right-handed 310
Helix 22	AC4	B	104	127	Right-handed alpha
Helix 23	AC5	B	138	151	Right-handed alpha
Helix 24	AC6	B	153	155	Right-handed 310
Helix 25	AC7	B	162	178	Right-handed alpha
Helix 26	AC8	B	180	182	Right-handed 310
Helix 27	AC9	B	200	202	Right-handed 310
Helix 28	AD1	B	210	214	Right-handed alpha
Helix 29	AD2	B	226	245	Right-handed alpha
Helix 30	AD3	B	248	265	Right-handed alpha
Helix 31	AD4	B	308	327	Right-handed alpha
Helix 32	AD5	C	2	8	Right-handed alpha
Helix 33	AD6	C	28	41	Right-handed alpha
Helix 34	AD7	C	53	67	Right-handed alpha
Helix 35	AD8	C	68	71	Right-handed 310
Helix 36	AD9	C	81	86	Right-handed 310
Helix 37	AE1	C	104	127	Right-handed alpha
Helix 38	AE2	C	138	151	Right-handed alpha
Helix 39	AE3	C	153	155	Right-handed 310
Helix 40	AE4	C	162	178	Right-handed alpha
Helix 41	AE5	C	180	182	Right-handed 310
Helix 42	AE6	C	210	214	Right-handed alpha
Helix 43	AE7	C	226	245	Right-handed alpha
Helix 44	AE8	C	248	265	Right-handed alpha
Helix 45	AE9	C	308	327	Right-handed alpha
Helix 46	AF1	D	2	8	Right-handed alpha
Helix 47	AF2	D	28	41	Right-handed alpha
Helix 48	AF3	D	53	67	Right-handed alpha
Helix 49	AF4	D	68	71	Right-handed 310
Helix 50	AF5	D	81	86	Right-handed 310
Helix 51	AF6	D	104	127	Right-handed alpha
Helix 52	AF7	D	138	151	Right-handed alpha
Helix 53	AF8	D	153	155	Right-handed 310
Helix 54	AF9	D	162	178	Right-handed alpha
Helix 55	AG1	D	180	184	Right-handed 310
Helix 56	AG2	D	200	202	Right-handed 310
Helix 57	AG3	D	210	214	Right-handed alpha
Helix 58	AG4	D	226	245	Right-handed alpha
Helix 59	AG5	D	248	264	Right-handed alpha
Helix 60	AG6	D	308	327	Right-handed alpha

There are 15 sheets in PDB entry 6Q13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	46	50	parallel
Strand 3	A	21	25	parallel
Strand 4	A	90	93	parallel
Strand 5	A	131	134	parallel
Strand 6	A	157	159	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	204	205	anti-parallel
Strand 3	A	208	209	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	197	198	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	275	first strand
Strand 2	A	287	295	anti-parallel
Strand 3	A	298	302	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	46	50	parallel
Strand 3	B	21	25	parallel
Strand 4	B	90	93	parallel
Strand 5	B	131	134	parallel
Strand 6	B	157	159	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	204	205	anti-parallel
Strand 3	B	208	209	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	197	198	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	275	first strand
Strand 2	B	287	295	anti-parallel
Strand 3	B	298	302	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	78	first strand
Strand 2	C	46	50	parallel
Strand 3	C	21	25	parallel
Strand 4	C	90	93	parallel
Strand 5	C	131	134	parallel
Strand 6	C	157	159	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	197	205	anti-parallel
Strand 3	C	208	209	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	275	first strand
Strand 2	C	287	295	anti-parallel
Strand 3	C	298	302	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	78	first strand
Strand 2	D	46	50	parallel
Strand 3	D	21	25	parallel
Strand 4	D	90	93	parallel
Strand 5	D	131	134	parallel
Strand 6	D	157	159	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	197	198	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	205	first strand
Strand 2	D	208	209	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	275	first strand
Strand 2	D	287	295	anti-parallel
Strand 3	D	298	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q13

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q13