Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q1I entry

There are 2 chains in PDB entry 6Q1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10HIS 357
B
 ALA 9VAL 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6Q1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
43 49Right-handed alpha
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
78 82Right-handed 310
Helix 5
AA5
A
89 106Right-handed alpha
Helix 6
AA6
A
127 146Right-handed alpha
Helix 7
AA7
A
174 195Right-handed alpha
Helix 8
AA8
A
196 201Right-handed 310
Helix 9
AA9
A
214 220Right-handed alpha
Helix 10
AB1
A
238 243Right-handed alpha
Helix 11
AB2
A
255 276Right-handed alpha
Helix 12
AB3
A
292 310Right-handed alpha
Helix 13
AB4
A
342 357Right-handed alpha
Helix 14
AB5
B
13 21Right-handed alpha
Helix 15
AB6
B
43 49Right-handed alpha
Helix 16
AB7
B
57 68Right-handed alpha
Helix 17
AB8
B
78 82Right-handed 310
Helix 18
AB9
B
89 106Right-handed alpha
Helix 19
AC1
B
124 146Right-handed alpha
Helix 20
AC2
B
174 195Right-handed alpha
Helix 21
AC3
B
196 201Right-handed 310
Helix 22
AC4
B
209 212Right-handed 310
Helix 23
AC5
B
214 220Right-handed alpha
Helix 24
AC6
B
238 243Right-handed alpha
Helix 25
AC7
B
255 276Right-handed alpha
Helix 26
AC8
B
292 310Right-handed alpha
Helix 27
AC9
B
342 355Right-handed alpha
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There are 2 sheets in PDB entry 6Q1I. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
71 74parallel
Strand 3
A
109 113parallel
Strand 4
A
153 156parallel
Strand 5
A
204 212parallel
Strand 6
A
229 234parallel
Strand 7
A
280 285parallel
Strand 8
A
314 318parallel
Strand 9
A
23 27parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
71 74parallel
Strand 3
B
109 113parallel
Strand 4
B
153 156parallel
Strand 5
B
204 207parallel
Strand 6
B
229 234parallel
Strand 7
B
280 285parallel
Strand 8
B
314 318parallel
Strand 9
B
23 27parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il