Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q1Q entry

There are 2 chains in PDB entry 6Q1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ARG 289
B
 ASN -1ARG 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6Q1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 27Right-handed alpha
Helix 2
AA2
A
43 58Right-handed alpha
Helix 3
AA3
A
64 83Right-handed alpha
Helix 4
AA4
A
113 123Right-handed alpha
Helix 5
AA5
A
136 141Right-handed alpha
Helix 6
AA6
A
142 145Right-handed 310
Helix 7
AA7
A
153 166Right-handed alpha
Helix 8
AA8
A
215 228Right-handed alpha
Helix 9
AA9
A
238 244Right-handed alpha
Helix 10
AB1
A
272 285Right-handed alpha
Helix 11
AB2
B
21 27Right-handed alpha
Helix 12
AB3
B
43 58Right-handed alpha
Helix 13
AB4
B
64 83Right-handed alpha
Helix 14
AB5
B
113 123Right-handed alpha
Helix 15
AB6
B
136 141Right-handed alpha
Helix 16
AB7
B
142 145Right-handed 310
Helix 17
AB8
B
153 166Right-handed alpha
Helix 18
AB9
B
215 228Right-handed alpha
Helix 19
AC1
B
238 244Right-handed alpha
Helix 20
AC2
B
272 285Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6Q1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 4first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
29 37anti-parallel
Strand 5
A
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
124 130parallel
Strand 3
A
257 263parallel
Strand 4
A
247 251anti-parallel
Strand 5
A
187 192anti-parallel
Strand 6
A
202 205anti-parallel
Strand 7
A
231 234parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
124 130parallel
Strand 3
A
257 263parallel
Strand 4
A
266 267anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 4first strand
Strand 2
B
104 111anti-parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
29 37anti-parallel
Strand 5
B
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 174first strand
Strand 2
B
124 130parallel
Strand 3
B
257 263parallel
Strand 4
B
247 251anti-parallel
Strand 5
B
187 192anti-parallel
Strand 6
B
202 205anti-parallel
Strand 7
B
231 234parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 174first strand
Strand 2
B
124 130parallel
Strand 3
B
257 263parallel
Strand 4
B
266 267anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il