Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q2C entry

There are 2 chains in PDB entry 6Q2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 40HIS 488
B
 SER 39HIS 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6Q2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 61Right-handed 310
Helix 2
AA2
A
64 76Right-handed alpha
Helix 3
AA3
A
93 103Right-handed alpha
Helix 4
AA4
A
110 115Right-handed alpha
Helix 5
AA5
A
117 122Right-handed alpha
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
130 145Right-handed alpha
Helix 8
AA8
A
146 167Right-handed alpha
Helix 9
AA9
A
176 194Right-handed alpha
Helix 10
AB1
A
194 201Right-handed alpha
Helix 11
AB2
A
201 215Right-handed alpha
Helix 12
AB3
A
216 222Right-handed 310
Helix 13
AB4
A
229 254Right-handed alpha
Helix 14
AB5
A
262 270Right-handed alpha
Helix 15
AB6
A
280 311Right-handed alpha
Helix 16
AB7
A
312 335Right-handed alpha
Helix 17
AB8
A
339 344Right-handed alpha
Helix 18
AB9
A
346 360Right-handed alpha
Helix 19
AC1
A
390 395Right-handed alpha
Helix 20
AC2
A
408 410Right-handed 310
Helix 21
AC3
A
411 417Right-handed alpha
Helix 22
AC4
A
429 433Right-handed 310
Helix 23
AC5
A
436 454Right-handed alpha
Helix 24
AC6
B
54 61Right-handed 310
Helix 25
AC7
B
64 76Right-handed alpha
Helix 26
AC8
B
93 102Right-handed alpha
Helix 27
AC9
B
110 115Right-handed alpha
Helix 28
AD1
B
117 122Right-handed alpha
Helix 29
AD2
B
125 129Right-handed 310
Helix 30
AD3
B
130 145Right-handed alpha
Helix 31
AD4
B
146 167Right-handed alpha
Helix 32
AD5
B
176 192Right-handed alpha
Helix 33
AD6
B
194 201Right-handed alpha
Helix 34
AD7
B
201 215Right-handed alpha
Helix 35
AD8
B
216 222Right-handed 310
Helix 36
AD9
B
228 255Right-handed alpha
Helix 37
AE1
B
262 269Right-handed alpha
Helix 38
AE2
B
280 312Right-handed alpha
Helix 39
AE3
B
312 335Right-handed alpha
Helix 40
AE4
B
339 344Right-handed alpha
Helix 41
AE5
B
346 360Right-handed alpha
Helix 42
AE6
B
390 395Right-handed alpha
Helix 43
AE7
B
408 410Right-handed 310
Helix 44
AE8
B
411 416Right-handed alpha
Helix 45
AE9
B
429 433Right-handed 310
Helix 46
AF1
B
436 454Right-handed alpha
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There are 8 sheets in PDB entry 6Q2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
B
78 83parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
386 389parallel
Strand 5
B
366 370anti-parallel
Strand 6
B
108 109anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
366 370anti-parallel
Strand 3
A
386 389anti-parallel
Strand 4
A
86 91parallel
Strand 5
A
78 83anti-parallel
Strand 6
B
46 50parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
480 485anti-parallel
Strand 3
A
455 459anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
379 381anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
474 475anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
480 485anti-parallel
Strand 3
B
455 459anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 376first strand
Strand 2
B
379 381anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 467first strand
Strand 2
B
474 475anti-parallel
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