Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q2D entry

There are 3 chains in PDB entry 6Q2D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 329
B	ASN 5	PHE 329
C	ARG 3	GLN 657

There are 75 helices in PDB entry 6Q2D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	19	Right-handed alpha
Helix 2	AA2	A	28	33	Right-handed 310
Helix 3	AA3	A	34	46	Right-handed alpha
Helix 4	AA4	A	64	69	Right-handed alpha
Helix 5	AA5	A	102	104	Right-handed 310
Helix 6	AA6	A	105	113	Right-handed alpha
Helix 7	AA7	A	125	129	Right-handed 310
Helix 8	AA8	A	130	141	Right-handed alpha
Helix 9	AA9	A	163	167	Right-handed 310
Helix 10	AB1	A	181	192	Right-handed alpha
Helix 11	AB2	A	208	227	Right-handed alpha
Helix 12	AB3	A	239	243	Right-handed 310
Helix 13	AB4	A	244	258	Right-handed alpha
Helix 14	AB5	A	271	276	Right-handed 310
Helix 15	AB6	A	290	296	Right-handed alpha
Helix 16	AB7	A	297	300	Right-handed 310
Helix 17	AB8	A	306	314	Right-handed alpha
Helix 18	AB9	A	318	322	Right-handed 310
Helix 19	AC1	B	7	18	Right-handed alpha
Helix 20	AC2	B	28	33	Right-handed 310
Helix 21	AC3	B	34	46	Right-handed alpha
Helix 22	AC4	B	59	63	Right-handed 310
Helix 23	AC5	B	64	69	Right-handed alpha
Helix 24	AC6	B	102	104	Right-handed 310
Helix 25	AC7	B	105	113	Right-handed alpha
Helix 26	AC8	B	125	129	Right-handed 310
Helix 27	AC9	B	130	141	Right-handed alpha
Helix 28	AD1	B	163	167	Right-handed 310
Helix 29	AD2	B	181	192	Right-handed alpha
Helix 30	AD3	B	208	227	Right-handed alpha
Helix 31	AD4	B	239	243	Right-handed 310
Helix 32	AD5	B	244	258	Right-handed alpha
Helix 33	AD6	B	271	276	Right-handed 310
Helix 34	AD7	B	290	296	Right-handed alpha
Helix 35	AD8	B	297	300	Right-handed 310
Helix 36	AD9	B	306	314	Right-handed alpha
Helix 37	AE1	B	318	322	Right-handed 310
Helix 38	AE2	C	4	15	Right-handed alpha
Helix 39	AE3	C	16	19	Right-handed 310
Helix 40	AE4	C	33	44	Right-handed alpha
Helix 41	AE5	C	101	112	Right-handed alpha
Helix 42	AE6	C	126	139	Right-handed alpha
Helix 43	AE7	C	149	158	Right-handed alpha
Helix 44	AE8	C	160	183	Right-handed alpha
Helix 45	AE9	C	184	188	Right-handed 310
Helix 46	AF1	C	212	220	Right-handed alpha
Helix 47	AF2	C	222	232	Right-handed alpha
Helix 48	AF3	C	234	242	Right-handed alpha
Helix 49	AF4	C	243	256	Right-handed alpha
Helix 50	AF5	C	258	271	Right-handed alpha
Helix 51	AF6	C	277	285	Right-handed alpha
Helix 52	AF7	C	404	419	Right-handed alpha
Helix 53	AF8	C	439	449	Right-handed alpha
Helix 54	AF9	C	496	505	Right-handed alpha
Helix 55	AG1	C	518	525	Right-handed alpha
Helix 56	AG2	C	528	534	Right-handed alpha
Helix 57	AG3	C	556	571	Right-handed alpha
Helix 58	AG4	C	599	617	Right-handed alpha
Helix 59	AG5	C	637	648	Right-handed alpha
Helix 60	AG6	C	671	673	Right-handed 310
Helix 61	AG7	C	675	684	Right-handed alpha
Helix 62	AG8	C	701	717	Right-handed alpha
Helix 63	AG9	C	724	729	Right-handed 310
Helix 64	AH1	F	404	419	Right-handed alpha
Helix 65	AH2	F	439	449	Right-handed alpha
Helix 66	AH3	F	496	505	Right-handed alpha
Helix 67	AH4	F	516	518	Right-handed 310
Helix 68	AH5	F	519	525	Right-handed alpha
Helix 69	AH6	F	528	533	Right-handed alpha
Helix 70	AH7	F	557	571	Right-handed alpha
Helix 71	AH8	F	602	617	Right-handed alpha
Helix 72	AH9	F	637	648	Right-handed alpha
Helix 73	AI1	F	671	673	Right-handed 310
Helix 74	AI2	F	675	684	Right-handed alpha
Helix 75	AI3	F	701	715	Right-handed alpha

There are 19 sheets in PDB entry 6Q2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	97	98	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	74	78	parallel
Strand 3	A	22	26	parallel
Strand 4	A	49	53	parallel
Strand 5	B	261	267	parallel
Strand 6	B	231	237	parallel
Strand 7	B	283	286	parallel
Strand 8	B	304	305	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	118	123	parallel
Strand 3	A	173	177	parallel
Strand 4	A	195	199	parallel
Strand 5	A	204	207	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	283	286	parallel
Strand 3	A	231	237	parallel
Strand 4	A	261	267	parallel
Strand 5	B	49	53	parallel
Strand 6	B	22	26	parallel
Strand 7	B	74	78	parallel
Strand 8	B	91	94	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	118	123	parallel
Strand 3	B	173	177	parallel
Strand 4	B	195	198	parallel
Strand 5	B	205	207	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	82	first strand
Strand 2	C	87	93	anti-parallel
Strand 3	C	21	28	parallel
Strand 4	C	114	120	parallel
Strand 5	C	142	148	parallel
Strand 6	C	200	204	parallel
Strand 7	C	209	211	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	338	342	anti-parallel
Strand 3	C	357	361	anti-parallel
Strand 4	C	306	315	anti-parallel
Strand 5	C	293	302	anti-parallel
Strand 6	C	371	373	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	351	353	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	324	first strand
Strand 2	C	333	334	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	426	first strand
Strand 2	C	433	437	anti-parallel
Strand 3	C	393	399	anti-parallel
Strand 4	C	457	459	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	426	first strand
Strand 2	C	433	437	anti-parallel
Strand 3	C	393	399	anti-parallel
Strand 4	C	463	464	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	578	579	first strand
Strand 2	C	467	470	parallel
Strand 3	C	620	634	anti-parallel
Strand 4	C	661	669	anti-parallel
Strand 5	C	651	658	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	578	579	first strand
Strand 2	C	467	470	parallel
Strand 3	C	620	634	anti-parallel
Strand 4	C	689	699	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	480	first strand
Strand 2	C	486	494	anti-parallel
Strand 3	C	582	591	anti-parallel
Strand 4	C	542	546	parallel
Strand 5	C	535	538	anti-parallel
Strand 6	C	511	512	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	426	first strand
Strand 2	F	433	437	anti-parallel
Strand 3	F	393	399	anti-parallel
Strand 4	F	457	459	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	426	first strand
Strand 2	F	433	437	anti-parallel
Strand 3	F	393	399	anti-parallel
Strand 4	F	463	464	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	578	579	first strand
Strand 2	F	467	470	parallel
Strand 3	F	620	634	anti-parallel
Strand 4	F	661	669	anti-parallel
Strand 5	F	651	658	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	578	579	first strand
Strand 2	F	467	470	parallel
Strand 3	F	620	634	anti-parallel
Strand 4	F	689	699	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	480	first strand
Strand 2	F	486	494	anti-parallel
Strand 3	F	582	591	anti-parallel
Strand 4	F	542	546	parallel
Strand 5	F	535	539	anti-parallel
Strand 6	F	511	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q2D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2D