Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q2F entry

There is 1 chain in PDB entry 6Q2F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 38	GLU 1140

There are 31 helices in PDB entry 6Q2F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	47	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	66	81	Right-handed alpha
Helix 4	AA4	A	106	124	Right-handed alpha
Helix 5	AA5	A	144	148	Right-handed 310
Helix 6	AA6	A	236	241	Right-handed 310
Helix 7	AA7	A	380	385	Right-handed alpha
Helix 8	AA8	A	392	396	Right-handed 310
Helix 9	AA9	A	407	411	Right-handed 310
Helix 10	AB1	A	415	418	Right-handed 310
Helix 11	AB2	A	455	459	Right-handed 310
Helix 12	AB3	A	467	487	Right-handed alpha
Helix 13	AB4	A	488	491	Right-handed 310
Helix 14	AB5	A	514	524	Right-handed alpha
Helix 15	AB6	A	527	536	Right-handed 310
Helix 16	AB7	A	541	564	Right-handed alpha
Helix 17	AB8	A	564	575	Right-handed alpha
Helix 18	AB9	A	595	599	Right-handed 310
Helix 19	AC1	A	618	636	Right-handed alpha
Helix 20	AC2	A	655	670	Right-handed alpha
Helix 21	AC3	A	706	709	Right-handed 310
Helix 22	AC4	A	710	726	Right-handed alpha
Helix 23	AC5	A	742	747	Right-handed alpha
Helix 24	AC6	A	765	772	Right-handed alpha
Helix 25	AC7	A	801	814	Right-handed alpha
Helix 26	AC8	A	829	834	Right-handed alpha
Helix 27	AC9	A	836	848	Right-handed alpha
Helix 28	AD1	A	866	874	Right-handed alpha
Helix 29	AD2	A	1012	1016	Right-handed 310
Helix 30	AD3	A	1018	1023	Right-handed alpha
Helix 31	AD4	A	1097	1105	Right-handed alpha

There are 14 sheets in PDB entry 6Q2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	697	first strand
Strand 2	A	641	648	anti-parallel
Strand 3	A	673	676	parallel
Strand 4	A	55	61	parallel
Strand 5	A	84	90	parallel
Strand 6	A	126	130	parallel
Strand 7	A	496	501	parallel
Strand 8	A	578	581	parallel
Strand 9	A	603	609	parallel
Strand 10	A	641	648	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	159	first strand
Strand 2	A	435	446	anti-parallel
Strand 3	A	205	216	anti-parallel
Strand 4	A	412	413	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	427	428	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	226	228	anti-parallel
Strand 3	A	260	277	anti-parallel
Strand 4	A	316	331	anti-parallel
Strand 5	A	293	297	anti-parallel
Strand 6	A	303	308	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	226	228	anti-parallel
Strand 3	A	260	277	anti-parallel
Strand 4	A	369	373	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	365	367	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	690	first strand
Strand 2	A	1114	1115	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	729	first strand
Strand 2	A	893	898	anti-parallel
Strand 3	A	901	907	anti-parallel
Strand 4	A	960	968	anti-parallel
Strand 5	A	925	930	anti-parallel
Strand 6	A	937	939	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	764	first strand
Strand 2	A	733	736	parallel
Strand 3	A	790	793	parallel
Strand 4	A	817	819	parallel
Strand 5	A	859	862	parallel
Strand 6	A	853	856	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	776	first strand
Strand 2	A	779	781	anti-parallel
Strand 3	A	787	788	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	880	883	first strand
Strand 2	A	914	920	anti-parallel
Strand 3	A	948	955	anti-parallel
Strand 4	A	942	945	anti-parallel
Strand 5	A	973	974	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	982	986	first strand
Strand 2	A	1136	1139	anti-parallel
Strand 3	A	1046	1049	anti-parallel
Strand 4	A	1075	1077	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1007	first strand
Strand 2	A	991	995	anti-parallel
Strand 3	A	1027	1036	anti-parallel
Strand 4	A	1085	1094	anti-parallel
Strand 5	A	1056	1061	anti-parallel
Strand 6	A	1064	1069	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1052	1054	first strand
Strand 2	A	1130	1133	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q2F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2F