Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q2J entry

There are 6 chains in PDB entry 6Q2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 201	ILE 308
C	TRP 129	ASN 318
E	LEU 29	PRO 622
B	ASP 201	ILE 308
D	TRP 129	ASN 318
F	LEU 29	PRO 622

There are 46 helices in PDB entry 6Q2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	220	224	Right-handed alpha
Helix 2	AA2	A	252	265	Right-handed alpha
Helix 3	AA3	C	130	139	Right-handed alpha
Helix 4	AA4	C	141	155	Right-handed alpha
Helix 5	AA5	C	163	177	Right-handed alpha
Helix 6	AA6	C	179	188	Right-handed alpha
Helix 7	AA7	C	195	206	Right-handed alpha
Helix 8	AA8	C	219	229	Right-handed alpha
Helix 9	AA9	C	230	244	Right-handed alpha
Helix 10	AB1	C	245	253	Right-handed alpha
Helix 11	AB2	C	255	260	Right-handed alpha
Helix 12	AB3	C	272	283	Right-handed alpha
Helix 13	AB4	C	285	289	Right-handed 310
Helix 14	AB5	C	300	312	Right-handed alpha
Helix 15	AB6	E	74	78	Right-handed 310
Helix 16	AB7	E	102	113	Right-handed alpha
Helix 17	AB8	E	156	160	Right-handed 310
Helix 18	AB9	E	161	165	Right-handed 310
Helix 19	AC1	E	190	197	Right-handed alpha
Helix 20	AC2	E	322	327	Right-handed alpha
Helix 21	AC3	E	429	433	Right-handed 310
Helix 22	AC4	E	475	478	Right-handed 310
Helix 23	AC5	E	581	585	Right-handed 310
Helix 24	AC6	B	220	224	Right-handed alpha
Helix 25	AC7	B	252	265	Right-handed alpha
Helix 26	AC8	D	130	139	Right-handed alpha
Helix 27	AC9	D	141	155	Right-handed alpha
Helix 28	AD1	D	163	177	Right-handed alpha
Helix 29	AD2	D	179	188	Right-handed alpha
Helix 30	AD3	D	195	206	Right-handed alpha
Helix 31	AD4	D	219	229	Right-handed alpha
Helix 32	AD5	D	230	244	Right-handed alpha
Helix 33	AD6	D	245	253	Right-handed alpha
Helix 34	AD7	D	255	260	Right-handed alpha
Helix 35	AD8	D	272	283	Right-handed alpha
Helix 36	AD9	D	285	289	Right-handed 310
Helix 37	AE1	D	300	312	Right-handed alpha
Helix 38	AE2	F	74	78	Right-handed 310
Helix 39	AE3	F	102	113	Right-handed alpha
Helix 40	AE4	F	156	160	Right-handed 310
Helix 41	AE5	F	161	165	Right-handed 310
Helix 42	AE6	F	190	197	Right-handed alpha
Helix 43	AE7	F	322	327	Right-handed alpha
Helix 44	AE8	F	429	433	Right-handed 310
Helix 45	AE9	F	475	478	Right-handed 310
Helix 46	AF1	F	581	585	Right-handed 310

There are 34 sheets in PDB entry 6Q2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	219	first strand
Strand 2	A	234	241	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	288	first strand
Strand 2	A	291	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	142	153	parallel
Strand 3	E	39	42	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	142	153	parallel
Strand 3	E	121	126	anti-parallel
Strand 4	E	67	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	94	97	anti-parallel
Strand 3	E	86	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	81	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	177	first strand
Strand 2	E	253	263	parallel
Strand 3	E	236	245	anti-parallel
Strand 4	E	202	206	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	222	225	anti-parallel
Strand 3	E	214	217	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	283	first strand
Strand 2	E	388	397	parallel
Strand 3	E	368	378	anti-parallel
Strand 4	E	314	318	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	300	first strand
Strand 2	E	347	358	anti-parallel
Strand 3	E	329	340	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	408	first strand
Strand 2	E	495	505	parallel
Strand 3	E	411	413	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	408	first strand
Strand 2	E	495	505	parallel
Strand 3	E	480	489	anti-parallel
Strand 4	E	438	443	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	421	425	first strand
Strand 2	E	462	467	anti-parallel
Strand 3	E	452	457	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	542	544	first strand
Strand 2	E	557	559	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	589	591	first strand
Strand 2	E	617	621	parallel
Strand 3	E	608	612	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	594	596	first strand
Strand 2	E	602	605	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	219	first strand
Strand 2	B	234	241	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	288	first strand
Strand 2	B	291	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	142	153	parallel
Strand 3	F	39	42	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	142	153	parallel
Strand 3	F	121	126	anti-parallel
Strand 4	F	67	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	94	97	anti-parallel
Strand 3	F	86	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	81	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	177	first strand
Strand 2	F	253	263	parallel
Strand 3	F	236	245	anti-parallel
Strand 4	F	202	206	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	222	225	anti-parallel
Strand 3	F	214	217	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	283	first strand
Strand 2	F	388	397	parallel
Strand 3	F	368	378	anti-parallel
Strand 4	F	314	318	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	300	first strand
Strand 2	F	347	358	anti-parallel
Strand 3	F	329	340	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	495	505	parallel
Strand 3	F	411	413	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	495	505	parallel
Strand 3	F	480	489	anti-parallel
Strand 4	F	438	443	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	425	first strand
Strand 2	F	462	467	anti-parallel
Strand 3	F	452	457	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	542	544	first strand
Strand 2	F	557	559	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	589	591	first strand
Strand 2	F	617	621	parallel
Strand 3	F	608	612	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	594	596	first strand
Strand 2	F	602	605	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2J