Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q2K entry

There is 1 chain in PDB entry 6Q2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 459GLU 789
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 6Q2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
459 479Right-handed alpha
Helix 2
AA2
A
514 525Right-handed alpha
Helix 3
AA3
A
533 548Right-handed alpha
Helix 4
AA4
A
697 701Right-handed 310
Helix 5
AA5
A
705 710Right-handed alpha
Helix 6
AA6
A
716 721Right-handed 310
Helix 7
AA7
A
779 789Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6Q2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
574 575anti-parallel
Strand 3
A
578 579anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
563 568anti-parallel
Strand 3
A
582 592anti-parallel
Strand 4
A
620 630anti-parallel
Strand 5
A
636 637anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
563 568anti-parallel
Strand 3
A
582 592anti-parallel
Strand 4
A
620 630anti-parallel
Strand 5
A
731 738anti-parallel
Strand 6
A
663 667anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 558first strand
Strand 2
A
599 604anti-parallel
Strand 3
A
612 615anti-parallel
Strand 4
A
742 745anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 646first strand
Strand 2
A
722 725anti-parallel
Strand 3
A
672 674anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
688 691anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il