Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q2M entry

There are 3 chains in PDB entry 6Q2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2GLY 545
B
 GLU 2ILE 535
C
 MET 1LYS 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6Q2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
53 71Right-handed alpha
Helix 4
AA4
A
88 98Right-handed alpha
Helix 5
AA5
A
110 122Right-handed alpha
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
164 172Right-handed alpha
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
212 223Right-handed alpha
Helix 10
AB1
A
245 258Right-handed alpha
Helix 11
AB2
A
269 280Right-handed alpha
Helix 12
AB3
A
288 291Right-handed 310
Helix 13
AB4
A
292 297Right-handed alpha
Helix 14
AB5
A
300 304Right-handed 310
Helix 15
AB6
A
320 331Right-handed alpha
Helix 16
AB7
A
343 346Right-handed 310
Helix 17
AB8
A
404 412Right-handed alpha
Helix 18
AB9
A
439 441Right-handed 310
Helix 19
AC1
A
450 461Right-handed alpha
Helix 20
AC2
A
494 504Right-handed alpha
Helix 21
AC3
A
531 539Right-handed alpha
Helix 22
AC4
B
3 7Right-handed 310
Helix 23
AC5
B
21 35Right-handed alpha
Helix 24
AC6
B
53 71Right-handed alpha
Helix 25
AC7
B
88 99Right-handed alpha
Helix 26
AC8
B
110 122Right-handed alpha
Helix 27
AC9
B
132 141Right-handed alpha
Helix 28
AD1
B
164 172Right-handed alpha
Helix 29
AD2
B
177 181Right-handed 310
Helix 30
AD3
B
212 223Right-handed alpha
Helix 31
AD4
B
245 258Right-handed alpha
Helix 32
AD5
B
269 280Right-handed alpha
Helix 33
AD6
B
289 297Right-handed alpha
Helix 34
AD7
B
300 304Right-handed 310
Helix 35
AD8
B
320 331Right-handed alpha
Helix 36
AD9
B
343 346Right-handed 310
Helix 37
AE1
B
404 412Right-handed alpha
Helix 38
AE2
B
439 441Right-handed 310
Helix 39
AE3
B
450 459Right-handed alpha
Helix 40
AE4
B
497 499Right-handed 310
Helix 41
AE5
B
500 505Right-handed alpha
Helix 42
AE6
C
1 7Right-handed 310
Helix 43
AE7
C
21 34Right-handed alpha
Helix 44
AE8
C
53 71Right-handed alpha
Helix 45
AE9
C
88 98Right-handed alpha
Helix 46
AF1
C
110 122Right-handed alpha
Helix 47
AF2
C
132 141Right-handed alpha
Helix 48
AF3
C
164 172Right-handed alpha
Helix 49
AF4
C
177 181Right-handed 310
Helix 50
AF5
C
212 224Right-handed alpha
Helix 51
AF6
C
245 258Right-handed alpha
Helix 52
AF7
C
271 280Right-handed alpha
Helix 53
AF8
C
289 295Right-handed alpha
Helix 54
AF9
C
299 304Right-handed 310
Helix 55
AG1
C
320 331Right-handed alpha
Helix 56
AG2
C
343 346Right-handed 310
Helix 57
AG3
C
404 412Right-handed alpha
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There are 14 sheets in PDB entry 6Q2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
370 374anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
418 426anti-parallel
Strand 5
A
432 437anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
261 264parallel
Strand 4
A
236 239parallel
Strand 5
A
282 287parallel
Strand 6
A
311 315parallel
Strand 7
A
336 341parallel
Strand 8
A
348 351anti-parallel
Strand 9
A
364 365anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
77 81parallel
Strand 3
A
125 128parallel
Strand 4
A
148 151parallel
Strand 5
A
162 163parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
400 401anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 443first strand
Strand 2
A
448 449anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 474first strand
Strand 2
A
478 487anti-parallel
Strand 3
A
516 518parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
370 374anti-parallel
Strand 3
B
388 393anti-parallel
Strand 4
B
418 426anti-parallel
Strand 5
B
432 437anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
40 44anti-parallel
Strand 3
B
261 264parallel
Strand 4
B
236 239parallel
Strand 5
B
284 287parallel
Strand 6
B
311 315parallel
Strand 7
B
337 341parallel
Strand 8
B
348 351anti-parallel
Strand 9
B
364 365anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 104first strand
Strand 2
B
77 81parallel
Strand 3
B
125 128parallel
Strand 4
B
148 151parallel
Strand 5
B
162 163parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 197first strand
Strand 2
B
207 211anti-parallel
Strand 3
B
400 401anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
370 374anti-parallel
Strand 3
C
388 393anti-parallel
Strand 4
C
418 426anti-parallel
Strand 5
C
432 437anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 52first strand
Strand 2
C
40 44anti-parallel
Strand 3
C
261 264parallel
Strand 4
C
236 239parallel
Strand 5
C
284 287parallel
Strand 6
C
311 315parallel
Strand 7
C
337 341parallel
Strand 8
C
348 351anti-parallel
Strand 9
C
364 365anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 104first strand
Strand 2
C
77 81parallel
Strand 3
C
125 128parallel
Strand 4
C
148 151parallel
Strand 5
C
162 163parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 198first strand
Strand 2
C
206 211anti-parallel
Strand 3
C
400 401anti-parallel
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