Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q2O entry

There are 6 chains in PDB entry 6Q2O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 100	VAL 197
B	ALA 100	VAL 197
C	PRO 37	ASN 357
E	LEU 29	PRO 622
D	PRO 37	ASN 357
F	LEU 29	PRO 622

There are 56 helices in PDB entry 6Q2O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	116	Right-handed 310
Helix 2	AA2	A	139	151	Right-handed alpha
Helix 3	AA3	B	113	116	Right-handed 310
Helix 4	AA4	B	139	151	Right-handed alpha
Helix 5	AA5	C	39	48	Right-handed alpha
Helix 6	AA6	C	51	65	Right-handed alpha
Helix 7	AA7	C	77	86	Right-handed alpha
Helix 8	AA8	C	101	110	Right-handed alpha
Helix 9	AA9	C	160	170	Right-handed alpha
Helix 10	AB1	C	173	186	Right-handed alpha
Helix 11	AB2	C	196	208	Right-handed alpha
Helix 12	AB3	C	212	221	Right-handed alpha
Helix 13	AB4	C	226	235	Right-handed alpha
Helix 14	AB5	C	236	238	Right-handed 310
Helix 15	AB6	C	250	261	Right-handed alpha
Helix 16	AB7	C	262	275	Right-handed alpha
Helix 17	AB8	C	285	288	Right-handed 310
Helix 18	AB9	C	289	299	Right-handed alpha
Helix 19	AC1	C	331	344	Right-handed alpha
Helix 20	AC2	C	345	357	Right-handed alpha
Helix 21	AC3	E	102	112	Right-handed alpha
Helix 22	AC4	E	162	167	Right-handed alpha
Helix 23	AC5	E	190	197	Right-handed alpha
Helix 24	AC6	E	309	313	Right-handed alpha
Helix 25	AC7	E	322	328	Right-handed alpha
Helix 26	AC8	E	429	433	Right-handed 310
Helix 27	AC9	E	470	475	Right-handed alpha
Helix 28	AD1	E	525	530	Right-handed alpha
Helix 29	AD2	E	564	568	Right-handed 310
Helix 30	AD3	E	581	585	Right-handed 310
Helix 31	AD4	D	39	48	Right-handed alpha
Helix 32	AD5	D	51	65	Right-handed alpha
Helix 33	AD6	D	77	86	Right-handed alpha
Helix 34	AD7	D	101	110	Right-handed alpha
Helix 35	AD8	D	160	170	Right-handed alpha
Helix 36	AD9	D	173	186	Right-handed alpha
Helix 37	AE1	D	196	208	Right-handed alpha
Helix 38	AE2	D	212	221	Right-handed alpha
Helix 39	AE3	D	226	235	Right-handed alpha
Helix 40	AE4	D	236	238	Right-handed 310
Helix 41	AE5	D	250	261	Right-handed alpha
Helix 42	AE6	D	262	275	Right-handed alpha
Helix 43	AE7	D	285	288	Right-handed 310
Helix 44	AE8	D	289	299	Right-handed alpha
Helix 45	AE9	D	331	344	Right-handed alpha
Helix 46	AF1	D	345	357	Right-handed alpha
Helix 47	AF2	F	102	112	Right-handed alpha
Helix 48	AF3	F	162	167	Right-handed alpha
Helix 49	AF4	F	190	197	Right-handed alpha
Helix 50	AF5	F	309	313	Right-handed alpha
Helix 51	AF6	F	322	328	Right-handed alpha
Helix 52	AF7	F	429	433	Right-handed 310
Helix 53	AF8	F	470	475	Right-handed alpha
Helix 54	AF9	F	525	530	Right-handed alpha
Helix 55	AG1	F	564	568	Right-handed 310
Helix 56	AG2	F	581	585	Right-handed 310

There are 36 sheets in PDB entry 6Q2O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	111	first strand
Strand 2	A	124	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	170	first strand
Strand 2	A	191	195	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	184	187	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	111	first strand
Strand 2	B	124	131	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	191	195	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	184	187	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	319	320	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	55	56	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	142	149	parallel
Strand 3	E	39	40	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	142	149	parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	67	68	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	94	97	anti-parallel
Strand 3	E	86	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	E	79	81	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	177	first strand
Strand 2	E	252	263	parallel
Strand 3	E	236	245	anti-parallel
Strand 4	E	202	206	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	222	225	anti-parallel
Strand 3	E	214	216	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	283	first strand
Strand 2	E	388	397	parallel
Strand 3	E	368	378	anti-parallel
Strand 4	E	314	318	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	300	first strand
Strand 2	E	347	358	anti-parallel
Strand 3	E	329	340	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	413	first strand
Strand 2	E	496	505	parallel
Strand 3	E	480	487	anti-parallel
Strand 4	E	440	441	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	421	425	first strand
Strand 2	E	462	467	anti-parallel
Strand 3	E	452	457	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	542	544	first strand
Strand 2	E	557	559	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	589	591	first strand
Strand 2	E	617	621	parallel
Strand 3	E	608	612	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	594	596	first strand
Strand 2	E	602	605	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	319	320	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	55	56	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	142	149	parallel
Strand 3	F	39	40	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	142	149	parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	67	68	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	94	97	anti-parallel
Strand 3	F	86	89	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	73	first strand
Strand 2	F	79	81	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	177	first strand
Strand 2	F	252	263	parallel
Strand 3	F	236	245	anti-parallel
Strand 4	F	202	206	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	222	225	anti-parallel
Strand 3	F	214	216	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	283	first strand
Strand 2	F	388	397	parallel
Strand 3	F	368	378	anti-parallel
Strand 4	F	314	318	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	300	first strand
Strand 2	F	347	358	anti-parallel
Strand 3	F	329	340	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	413	first strand
Strand 2	F	496	505	parallel
Strand 3	F	480	487	anti-parallel
Strand 4	F	440	441	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	425	first strand
Strand 2	F	462	467	anti-parallel
Strand 3	F	452	457	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	542	544	first strand
Strand 2	F	557	559	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	589	591	first strand
Strand 2	F	617	621	parallel
Strand 3	F	608	612	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	594	596	first strand
Strand 2	F	602	605	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q2O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2O