Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q2P entry

There are 2 chains in PDB entry 6Q2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 70LEU 360
B
 ARG 70TRP 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6Q2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 116Right-handed alpha
Helix 2
AA2
A
127 133Right-handed 310
Helix 3
AA3
A
134 147Right-handed alpha
Helix 4
AA4
A
163 171Right-handed alpha
Helix 5
AA5
A
172 174Right-handed 310
Helix 6
AA6
A
185 193Right-handed alpha
Helix 7
AA7
A
200 216Right-handed alpha
Helix 8
AA8
A
234 242Right-handed alpha
Helix 9
AA9
A
267 271Right-handed 310
Helix 10
AB1
A
273 284Right-handed alpha
Helix 11
AB2
A
294 299Right-handed alpha
Helix 12
AB3
A
325 329Right-handed alpha
Helix 13
AB4
A
329 335Right-handed alpha
Helix 14
AB5
A
340 347Right-handed alpha
Helix 15
AB6
A
354 358Right-handed 310
Helix 16
AB7
B
102 116Right-handed alpha
Helix 17
AB8
B
127 133Right-handed 310
Helix 18
AB9
B
134 147Right-handed alpha
Helix 19
AC1
B
163 171Right-handed alpha
Helix 20
AC2
B
172 174Right-handed 310
Helix 21
AC3
B
185 193Right-handed alpha
Helix 22
AC4
B
202 216Right-handed alpha
Helix 23
AC5
B
234 242Right-handed alpha
Helix 24
AC6
B
267 271Right-handed 310
Helix 25
AC7
B
273 284Right-handed alpha
Helix 26
AC8
B
294 299Right-handed alpha
Helix 27
AC9
B
325 329Right-handed alpha
Helix 28
AD1
B
329 335Right-handed alpha
Helix 29
AD2
B
340 347Right-handed alpha
Helix 30
AD3
B
354 358Right-handed 310
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There are 4 sheets in PDB entry 6Q2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
245 250parallel
Strand 3
A
218 225parallel
Strand 4
A
176 180parallel
Strand 5
A
152 157parallel
Strand 6
A
120 124parallel
Strand 7
A
75 79parallel
Strand 8
A
303 305parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
320 324anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
245 250parallel
Strand 3
B
218 225parallel
Strand 4
B
176 180parallel
Strand 5
B
152 157parallel
Strand 6
B
120 124parallel
Strand 7
B
75 79parallel
Strand 8
B
303 305parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 313first strand
Strand 2
B
320 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il