Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q2S entry

There are 6 chains in PDB entry 6Q2S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 122	LEU 219
C	SER 159	SER 357
E	LEU 29	PRO 622
B	GLY 122	LEU 219
D	SER 159	SER 357
F	LEU 29	PRO 622

There are 48 helices in PDB entry 6Q2S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	133	136	Right-handed 310
Helix 2	AA2	A	159	169	Right-handed alpha
Helix 3	AA3	C	160	171	Right-handed alpha
Helix 4	AA4	C	172	184	Right-handed alpha
Helix 5	AA5	C	192	197	Right-handed alpha
Helix 6	AA6	C	197	206	Right-handed alpha
Helix 7	AA7	C	208	217	Right-handed alpha
Helix 8	AA8	C	224	233	Right-handed alpha
Helix 9	AA9	C	236	241	Right-handed alpha
Helix 10	AB1	C	249	258	Right-handed alpha
Helix 11	AB2	C	260	272	Right-handed alpha
Helix 12	AB3	C	286	293	Right-handed alpha
Helix 13	AB4	C	294	296	Right-handed 310
Helix 14	AB5	C	325	337	Right-handed alpha
Helix 15	AB6	C	338	356	Right-handed alpha
Helix 16	AB7	E	104	109	Right-handed alpha
Helix 17	AB8	E	156	160	Right-handed 310
Helix 18	AB9	E	162	167	Right-handed alpha
Helix 19	AC1	E	190	197	Right-handed alpha
Helix 20	AC2	E	309	314	Right-handed alpha
Helix 21	AC3	E	322	329	Right-handed alpha
Helix 22	AC4	E	518	522	Right-handed 310
Helix 23	AC5	E	525	530	Right-handed alpha
Helix 24	AC6	E	581	585	Right-handed 310
Helix 25	AC7	B	133	136	Right-handed 310
Helix 26	AC8	B	159	169	Right-handed alpha
Helix 27	AC9	D	160	171	Right-handed alpha
Helix 28	AD1	D	172	184	Right-handed alpha
Helix 29	AD2	D	192	197	Right-handed alpha
Helix 30	AD3	D	197	206	Right-handed alpha
Helix 31	AD4	D	208	217	Right-handed alpha
Helix 32	AD5	D	224	233	Right-handed alpha
Helix 33	AD6	D	236	241	Right-handed alpha
Helix 34	AD7	D	249	258	Right-handed alpha
Helix 35	AD8	D	260	272	Right-handed alpha
Helix 36	AD9	D	286	293	Right-handed alpha
Helix 37	AE1	D	294	296	Right-handed 310
Helix 38	AE2	D	325	337	Right-handed alpha
Helix 39	AE3	D	338	356	Right-handed alpha
Helix 40	AE4	F	104	109	Right-handed alpha
Helix 41	AE5	F	156	160	Right-handed 310
Helix 42	AE6	F	162	167	Right-handed alpha
Helix 43	AE7	F	190	197	Right-handed alpha
Helix 44	AE8	F	309	314	Right-handed alpha
Helix 45	AE9	F	322	329	Right-handed alpha
Helix 46	AF1	F	518	522	Right-handed 310
Helix 47	AF2	F	525	530	Right-handed alpha
Helix 48	AF3	F	581	585	Right-handed 310

There are 36 sheets in PDB entry 6Q2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	150	151	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	144	147	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	199	first strand
Strand 2	A	205	219	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	312	313	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	55	56	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	142	153	parallel
Strand 3	E	39	42	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	142	153	parallel
Strand 3	E	121	126	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	52	first strand
Strand 2	E	94	97	anti-parallel
Strand 3	E	86	89	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	252	262	parallel
Strand 3	E	236	245	anti-parallel
Strand 4	E	202	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	222	225	anti-parallel
Strand 3	E	214	216	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	300	first strand
Strand 2	E	346	357	anti-parallel
Strand 3	E	330	341	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	318	first strand
Strand 2	E	368	376	anti-parallel
Strand 3	E	389	397	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	413	first strand
Strand 2	E	496	505	parallel
Strand 3	E	483	489	anti-parallel
Strand 4	E	438	444	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	413	first strand
Strand 2	E	496	505	parallel
Strand 3	E	480	481	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	421	425	first strand
Strand 2	E	462	467	anti-parallel
Strand 3	E	452	457	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	542	544	first strand
Strand 2	E	557	559	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	551	552	first strand
Strand 2	E	602	606	anti-parallel
Strand 3	E	594	596	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	589	591	first strand
Strand 2	E	617	621	parallel
Strand 3	E	608	612	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	150	151	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	144	147	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	199	first strand
Strand 2	B	205	219	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	D	312	313	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	55	56	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	142	153	parallel
Strand 3	F	39	42	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	142	153	parallel
Strand 3	F	121	126	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	52	first strand
Strand 2	F	94	97	anti-parallel
Strand 3	F	86	89	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	176	first strand
Strand 2	F	252	262	parallel
Strand 3	F	236	245	anti-parallel
Strand 4	F	202	206	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	222	225	anti-parallel
Strand 3	F	214	216	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	300	first strand
Strand 2	F	346	357	anti-parallel
Strand 3	F	330	341	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	318	first strand
Strand 2	F	368	376	anti-parallel
Strand 3	F	389	397	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	413	first strand
Strand 2	F	496	505	parallel
Strand 3	F	483	489	anti-parallel
Strand 4	F	438	444	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	413	first strand
Strand 2	F	496	505	parallel
Strand 3	F	480	481	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	425	first strand
Strand 2	F	462	467	anti-parallel
Strand 3	F	452	457	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	542	544	first strand
Strand 2	F	557	559	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	551	552	first strand
Strand 2	F	602	606	anti-parallel
Strand 3	F	594	596	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	589	591	first strand
Strand 2	F	617	621	parallel
Strand 3	F	608	612	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q2S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2S