Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q2T entry

There are 2 chains in PDB entry 6Q2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 58SER 502
B
 LYS 59SER 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6Q2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 80Right-handed alpha
Helix 2
AA2
A
80 93Right-handed alpha
Helix 3
AA3
A
110 120Right-handed alpha
Helix 4
AA4
A
127 140Right-handed alpha
Helix 5
AA5
A
143 147Right-handed 310
Helix 6
AA6
A
148 163Right-handed alpha
Helix 7
AA7
A
164 183Right-handed alpha
Helix 8
AA8
A
194 211Right-handed alpha
Helix 9
AA9
A
212 217Right-handed alpha
Helix 10
AB1
A
220 232Right-handed alpha
Helix 11
AB2
A
235 241Right-handed alpha
Helix 12
AB3
A
247 274Right-handed alpha
Helix 13
AB4
A
280 288Right-handed alpha
Helix 14
AB5
A
297 330Right-handed alpha
Helix 15
AB6
A
330 346Right-handed alpha
Helix 16
AB7
A
353 358Right-handed alpha
Helix 17
AB8
A
360 374Right-handed alpha
Helix 18
AB9
A
404 409Right-handed alpha
Helix 19
AC1
A
422 427Right-handed 310
Helix 20
AC2
A
430 435Right-handed alpha
Helix 21
AC3
A
444 448Right-handed 310
Helix 22
AC4
A
451 469Right-handed alpha
Helix 23
AC5
B
73 80Right-handed alpha
Helix 24
AC6
B
80 93Right-handed alpha
Helix 25
AC7
B
110 120Right-handed alpha
Helix 26
AC8
B
127 140Right-handed alpha
Helix 27
AC9
B
143 147Right-handed 310
Helix 28
AD1
B
148 163Right-handed alpha
Helix 29
AD2
B
164 183Right-handed alpha
Helix 30
AD3
B
184 186Right-handed 310
Helix 31
AD4
B
194 212Right-handed alpha
Helix 32
AD5
B
212 217Right-handed alpha
Helix 33
AD6
B
220 232Right-handed alpha
Helix 34
AD7
B
235 241Right-handed alpha
Helix 35
AD8
B
247 274Right-handed alpha
Helix 36
AD9
B
280 288Right-handed alpha
Helix 37
AE1
B
297 330Right-handed alpha
Helix 38
AE2
B
330 346Right-handed alpha
Helix 39
AE3
B
353 358Right-handed alpha
Helix 40
AE4
B
360 374Right-handed alpha
Helix 41
AE5
B
404 409Right-handed alpha
Helix 42
AE6
B
422 428Right-handed 310
Helix 43
AE7
B
430 435Right-handed alpha
Helix 44
AE8
B
444 448Right-handed 310
Helix 45
AE9
B
451 469Right-handed alpha
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There are 8 sheets in PDB entry 6Q2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
400 403parallel
Strand 4
A
380 384anti-parallel
Strand 5
A
125 126anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
495 500anti-parallel
Strand 3
A
470 473anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
393 395anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 483first strand
Strand 2
A
490 491anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
400 403parallel
Strand 4
B
380 384anti-parallel
Strand 5
B
125 126anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 193first strand
Strand 2
B
495 500anti-parallel
Strand 3
B
470 473anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
393 395anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 483first strand
Strand 2
B
490 491anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il