Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q2V entry

There are 8 chains in PDB entry 6Q2V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1206	GLN 1354
B	ASN 1206	ARG 1353
C	ASN 1206	GLN 1354
D	ASN 1206	GLN 1354
E	ASN 1206	LYS 1350
F	ASN 1206	LYS 1350
G	ASN 1206	ARG 1348
H	ASN 1206	LEU 1351

There are 30 helices in PDB entry 6Q2V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1234	1239	Right-handed alpha
Helix 2	AA2	A	1250	1264	Right-handed alpha
Helix 3	AA3	A	1278	1296	Right-handed alpha
Helix 4	AA4	A	1323	1327	Right-handed 310
Helix 5	AA5	B	1234	1239	Right-handed alpha
Helix 6	AA6	B	1250	1264	Right-handed alpha
Helix 7	AA7	B	1278	1295	Right-handed alpha
Helix 8	AA8	B	1323	1327	Right-handed 310
Helix 9	AA9	C	1234	1239	Right-handed alpha
Helix 10	AB1	C	1250	1264	Right-handed alpha
Helix 11	AB2	C	1278	1294	Right-handed alpha
Helix 12	AB3	C	1323	1327	Right-handed 310
Helix 13	AB4	D	1234	1239	Right-handed alpha
Helix 14	AB5	D	1250	1264	Right-handed alpha
Helix 15	AB6	D	1278	1296	Right-handed alpha
Helix 16	AB7	D	1323	1327	Right-handed 310
Helix 17	AB8	E	1234	1239	Right-handed alpha
Helix 18	AB9	E	1250	1264	Right-handed alpha
Helix 19	AC1	E	1281	1296	Right-handed alpha
Helix 20	AC2	F	1234	1239	Right-handed alpha
Helix 21	AC3	F	1250	1264	Right-handed alpha
Helix 22	AC4	F	1278	1296	Right-handed alpha
Helix 23	AC5	F	1323	1327	Right-handed 310
Helix 24	AC6	G	1234	1239	Right-handed alpha
Helix 25	AC7	G	1250	1265	Right-handed alpha
Helix 26	AC8	G	1279	1295	Right-handed alpha
Helix 27	AC9	H	1234	1239	Right-handed alpha
Helix 28	AD1	H	1250	1264	Right-handed alpha
Helix 29	AD2	H	1278	1296	Right-handed alpha
Helix 30	AD3	H	1323	1327	Right-handed 310

There are 8 sheets in PDB entry 6Q2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1209	1215	first strand
Strand 2	A	1219	1229	anti-parallel
Strand 3	A	1267	1276	anti-parallel
Strand 4	A	1341	1349	anti-parallel
Strand 5	A	1308	1316	anti-parallel
Strand 6	A	1298	1301	anti-parallel
Strand 7	A	1242	1249	anti-parallel
Strand 8	A	1209	1215	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1209	1215	first strand
Strand 2	B	1219	1229	anti-parallel
Strand 3	B	1267	1276	anti-parallel
Strand 4	B	1341	1349	anti-parallel
Strand 5	B	1310	1316	anti-parallel
Strand 6	B	1298	1301	anti-parallel
Strand 7	B	1242	1249	anti-parallel
Strand 8	B	1209	1215	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1209	1214	first strand
Strand 2	C	1220	1229	anti-parallel
Strand 3	C	1267	1276	anti-parallel
Strand 4	C	1341	1349	anti-parallel
Strand 5	C	1308	1316	anti-parallel
Strand 6	C	1298	1301	anti-parallel
Strand 7	C	1242	1249	anti-parallel
Strand 8	C	1209	1214	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1209	1215	first strand
Strand 2	D	1219	1229	anti-parallel
Strand 3	D	1267	1276	anti-parallel
Strand 4	D	1341	1349	anti-parallel
Strand 5	D	1308	1316	anti-parallel
Strand 6	D	1298	1301	anti-parallel
Strand 7	D	1242	1249	anti-parallel
Strand 8	D	1209	1215	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1209	1215	first strand
Strand 2	E	1219	1229	anti-parallel
Strand 3	E	1267	1276	anti-parallel
Strand 4	E	1341	1349	anti-parallel
Strand 5	E	1308	1316	anti-parallel
Strand 6	E	1298	1301	anti-parallel
Strand 7	E	1242	1249	anti-parallel
Strand 8	E	1209	1215	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1209	1215	first strand
Strand 2	F	1219	1229	anti-parallel
Strand 3	F	1267	1276	anti-parallel
Strand 4	F	1341	1349	anti-parallel
Strand 5	F	1308	1316	anti-parallel
Strand 6	F	1299	1301	anti-parallel
Strand 7	F	1242	1247	anti-parallel
Strand 8	F	1209	1215	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1209	1215	first strand
Strand 2	G	1219	1229	anti-parallel
Strand 3	G	1269	1276	anti-parallel
Strand 4	G	1341	1347	anti-parallel
Strand 5	G	1310	1316	anti-parallel
Strand 6	G	1298	1301	anti-parallel
Strand 7	G	1242	1249	anti-parallel
Strand 8	G	1209	1215	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1242	1244	first strand
Strand 2	H	1209	1215	parallel
Strand 3	H	1219	1229	anti-parallel
Strand 4	H	1267	1276	anti-parallel
Strand 5	H	1341	1349	anti-parallel
Strand 6	H	1308	1316	anti-parallel
Strand 7	H	1299	1300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q2V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2V