Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q34 entry

There are 2 chains in PDB entry 6Q34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 55PHE 416
B
 SER 56PHE 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6Q34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 107Right-handed alpha
Helix 2
AA2
A
146 151Right-handed 310
Helix 3
AA3
A
154 158Right-handed 310
Helix 4
AA4
A
174 178Right-handed 310
Helix 5
AA5
A
190 205Right-handed alpha
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
259 263Right-handed 310
Helix 8
AA8
A
264 268Right-handed 310
Helix 9
AA9
A
281 287Right-handed alpha
Helix 10
AB1
A
289 298Right-handed alpha
Helix 11
AB2
A
317 321Right-handed 310
Helix 12
AB3
A
325 331Right-handed alpha
Helix 13
AB4
A
332 336Right-handed 310
Helix 14
AB5
A
369 372Right-handed 310
Helix 15
AB6
A
373 381Right-handed alpha
Helix 16
AB7
A
382 388Right-handed 310
Helix 17
AB8
B
87 107Right-handed alpha
Helix 18
AB9
B
146 151Right-handed 310
Helix 19
AC1
B
154 158Right-handed 310
Helix 20
AC2
B
174 178Right-handed 310
Helix 21
AC3
B
190 205Right-handed alpha
Helix 22
AC4
B
248 256Right-handed alpha
Helix 23
AC5
B
259 263Right-handed 310
Helix 24
AC6
B
264 268Right-handed 310
Helix 25
AC7
B
281 287Right-handed alpha
Helix 26
AC8
B
289 298Right-handed alpha
Helix 27
AC9
B
317 321Right-handed 310
Helix 28
AD1
B
325 331Right-handed alpha
Helix 29
AD2
B
332 335Right-handed 310
Helix 30
AD3
B
369 372Right-handed 310
Helix 31
AD4
B
373 381Right-handed alpha
Helix 32
AD5
B
382 388Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6Q34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
75 83anti-parallel
Strand 4
A
209 217anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
345 351anti-parallel
Strand 3
A
357 367anti-parallel
Strand 4
A
341 342anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
345 351anti-parallel
Strand 3
A
357 367anti-parallel
Strand 4
A
271 280anti-parallel
Strand 5
A
390 400anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 144first strand
Strand 2
B
182 188anti-parallel
Strand 3
B
75 83anti-parallel
Strand 4
B
209 218anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
357 367anti-parallel
Strand 3
B
345 351anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
357 367anti-parallel
Strand 3
B
271 280anti-parallel
Strand 4
B
390 400anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il