Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q39 entry

There are 3 chains in PDB entry 6Q39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 24GLY 329
B
 HIS 24GLY 329
C
 HIS 24GLY 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6Q39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 43Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
53 61Right-handed alpha
Helix 4
AA4
A
88 109Right-handed alpha
Helix 5
AA5
A
121 134Right-handed alpha
Helix 6
AA6
A
158 167Right-handed 310
Helix 7
AA7
A
168 175Right-handed 310
Helix 8
AA8
A
189 191Right-handed 310
Helix 9
AA9
A
202 212Right-handed alpha
Helix 10
AB1
A
219 226Right-handed alpha
Helix 11
AB2
A
226 240Right-handed alpha
Helix 12
AB3
A
253 255Right-handed 310
Helix 13
AB4
A
272 286Right-handed alpha
Helix 14
AB5
A
298 302Right-handed 310
Helix 15
AB6
A
304 323Right-handed alpha
Helix 16
AB7
B
41 43Right-handed 310
Helix 17
AB8
B
44 52Right-handed alpha
Helix 18
AB9
B
53 61Right-handed alpha
Helix 19
AC1
B
88 109Right-handed alpha
Helix 20
AC2
B
119 121Right-handed 310
Helix 21
AC3
B
122 133Right-handed alpha
Helix 22
AC4
B
158 161Right-handed 310
Helix 23
AC5
B
162 168Right-handed alpha
Helix 24
AC6
B
169 175Right-handed 310
Helix 25
AC7
B
189 191Right-handed 310
Helix 26
AC8
B
202 212Right-handed alpha
Helix 27
AC9
B
219 226Right-handed alpha
Helix 28
AD1
B
226 240Right-handed alpha
Helix 29
AD2
B
253 255Right-handed 310
Helix 30
AD3
B
272 287Right-handed alpha
Helix 31
AD4
B
298 302Right-handed 310
Helix 32
AD5
B
304 323Right-handed alpha
Helix 33
AD6
C
41 43Right-handed 310
Helix 34
AD7
C
44 52Right-handed alpha
Helix 35
AD8
C
53 61Right-handed alpha
Helix 36
AD9
C
88 109Right-handed alpha
Helix 37
AE1
C
119 121Right-handed 310
Helix 38
AE2
C
122 134Right-handed alpha
Helix 39
AE3
C
158 167Right-handed 310
Helix 40
AE4
C
168 175Right-handed 310
Helix 41
AE5
C
189 191Right-handed 310
Helix 42
AE6
C
202 212Right-handed alpha
Helix 43
AE7
C
219 226Right-handed alpha
Helix 44
AE8
C
226 240Right-handed alpha
Helix 45
AE9
C
253 255Right-handed 310
Helix 46
AF1
C
272 286Right-handed alpha
Helix 47
AF2
C
298 302Right-handed 310
Helix 48
AF3
C
304 323Right-handed alpha
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There are 3 sheets in PDB entry 6Q39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
25 30parallel
Strand 3
A
112 116parallel
Strand 4
A
289 295parallel
Strand 5
A
246 251parallel
Strand 6
A
138 142parallel
Strand 7
A
193 198parallel
Strand 8
A
215 218parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 70first strand
Strand 2
B
25 31parallel
Strand 3
B
112 117parallel
Strand 4
B
289 295parallel
Strand 5
B
246 251parallel
Strand 6
B
138 142parallel
Strand 7
B
193 198parallel
Strand 8
B
215 218parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 70first strand
Strand 2
C
25 30parallel
Strand 3
C
112 116parallel
Strand 4
C
289 295parallel
Strand 5
C
246 251parallel
Strand 6
C
138 142parallel
Strand 7
C
193 198parallel
Strand 8
C
215 218parallel
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