Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q4W entry

There are 2 chains in PDB entry 6Q4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13PHE 328
B
 CYS 16PHE 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6Q4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 16Right-handed 310
Helix 2
AA2
A
17 29Right-handed alpha
Helix 3
AA3
A
184 188Right-handed 310
Helix 4
AA4
A
189 195Right-handed alpha
Helix 5
AA5
A
201 205Right-handed 310
Helix 6
AA6
A
265 269Right-handed 310
Helix 7
AA7
A
276 280Right-handed 310
Helix 8
AA8
B
17 29Right-handed alpha
Helix 9
AA9
B
184 188Right-handed 310
Helix 10
AB1
B
189 195Right-handed alpha
Helix 11
AB2
B
201 205Right-handed 310
Helix 12
AB3
B
265 269Right-handed 310
Helix 13
AB4
B
276 280Right-handed 310
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There are 12 sheets in PDB entry 6Q4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
306 312anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
283 290anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
87 90parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
59 67anti-parallel
Strand 5
A
46 48anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
87 90parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
59 67anti-parallel
Strand 5
A
54 56anti-parallel
Strand 6
A
327 328parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 107first strand
Strand 2
A
110 121anti-parallel
Strand 3
A
124 135anti-parallel
Strand 4
A
141 145anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
163 168anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
197 198anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 216first strand
Strand 2
A
222 233anti-parallel
Strand 3
A
239 251anti-parallel
Strand 4
A
256 264anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
306 312anti-parallel
Strand 3
B
296 302anti-parallel
Strand 4
B
283 290anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
87 90parallel
Strand 3
B
76 84anti-parallel
Strand 4
B
59 67anti-parallel
Strand 5
B
46 48anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
87 90parallel
Strand 3
B
76 84anti-parallel
Strand 4
B
59 67anti-parallel
Strand 5
B
54 56anti-parallel
Strand 6
B
327 328parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
110 121anti-parallel
Strand 3
B
124 135anti-parallel
Strand 4
B
141 145anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 157first strand
Strand 2
B
163 167anti-parallel
Strand 3
B
178 182anti-parallel
Strand 4
B
197 198anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 216first strand
Strand 2
B
222 233anti-parallel
Strand 3
B
239 251anti-parallel
Strand 4
B
256 264anti-parallel
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