Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q55 entry

There is 1 chain in PDB entry 6Q55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20PHE 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6Q55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 65Right-handed 310
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
72 76Right-handed 310
Helix 4
AA4
A
85 90Right-handed alpha
Helix 5
AA5
A
91 97Right-handed alpha
Helix 6
AA6
A
108 123Right-handed alpha
Helix 7
AA7
A
147 157Right-handed alpha
Helix 8
AA8
A
237 255Right-handed alpha
Helix 9
AA9
A
267 283Right-handed alpha
Helix 10
AB1
A
284 287Right-handed 310
Helix 11
AB2
A
298 308Right-handed alpha
Helix 12
AB3
A
309 312Right-handed 310
Helix 13
AB4
A
313 322Right-handed alpha
Helix 14
AB5
A
337 340Right-handed 310
Helix 15
AB6
A
341 347Right-handed alpha
Helix 16
AB7
A
362 373Right-handed alpha
Helix 17
AB8
A
390 395Right-handed alpha
Helix 18
AB9
A
425 436Right-handed alpha
Helix 19
AC1
A
447 462Right-handed alpha
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There are 4 sheets in PDB entry 6Q55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
104 107parallel
Strand 3
A
78 80parallel
Strand 4
A
47 51parallel
Strand 5
A
39 44anti-parallel
Strand 6
A
23 30anti-parallel
Strand 7
A
475 479anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
172 178anti-parallel
Strand 3
A
186 192anti-parallel
Strand 4
A
195 199anti-parallel
Strand 5
A
223 227parallel
Strand 6
A
440 444parallel
Strand 7
A
466 468parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
291 294parallel
Strand 3
A
351 355parallel
Strand 4
A
258 262parallel
Strand 5
A
379 382parallel
Strand 6
A
414 417parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
408 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il