Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q56 entry

There are 4 chains in PDB entry 6Q56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ASP 236
B
 GLU 3ASP 236
C
 GLU 3ASP 236
D
 GLU 3ASP 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 6Q56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
78 83Right-handed 310
Helix 5
AA5
A
97 108Right-handed alpha
Helix 6
AA6
A
109 112Right-handed 310
Helix 7
AA7
A
126 136Right-handed alpha
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
171 179Right-handed alpha
Helix 10
AB1
A
179 186Right-handed alpha
Helix 11
AB2
A
187 211Right-handed alpha
Helix 12
AB3
A
214 235Right-handed alpha
Helix 13
AB4
B
7 16Right-handed alpha
Helix 14
AB5
B
31 40Right-handed alpha
Helix 15
AB6
B
52 66Right-handed alpha
Helix 16
AB7
B
68 70Right-handed 310
Helix 17
AB8
B
78 83Right-handed 310
Helix 18
AB9
B
97 108Right-handed alpha
Helix 19
AC1
B
109 112Right-handed 310
Helix 20
AC2
B
125 136Right-handed alpha
Helix 21
AC3
B
164 168Right-handed 310
Helix 22
AC4
B
171 179Right-handed alpha
Helix 23
AC5
B
179 186Right-handed alpha
Helix 24
AC6
B
187 210Right-handed alpha
Helix 25
AC7
B
214 236Right-handed alpha
Helix 26
AC8
C
7 15Right-handed alpha
Helix 27
AC9
C
31 40Right-handed alpha
Helix 28
AD1
C
52 67Right-handed alpha
Helix 29
AD2
C
78 83Right-handed 310
Helix 30
AD3
C
98 108Right-handed alpha
Helix 31
AD4
C
109 112Right-handed 310
Helix 32
AD5
C
125 136Right-handed alpha
Helix 33
AD6
C
164 168Right-handed 310
Helix 34
AD7
C
171 179Right-handed alpha
Helix 35
AD8
C
179 186Right-handed alpha
Helix 36
AD9
C
187 210Right-handed alpha
Helix 37
AE1
C
214 236Right-handed alpha
Helix 38
AE2
D
7 16Right-handed alpha
Helix 39
AE3
D
31 40Right-handed alpha
Helix 40
AE4
D
52 66Right-handed alpha
Helix 41
AE5
D
78 83Right-handed 310
Helix 42
AE6
D
97 108Right-handed alpha
Helix 43
AE7
D
109 112Right-handed 310
Helix 44
AE8
D
126 136Right-handed alpha
Helix 45
AE9
D
164 168Right-handed 310
Helix 46
AF1
D
171 179Right-handed alpha
Helix 47
AF2
D
179 186Right-handed alpha
Helix 48
AF3
D
187 210Right-handed alpha
Helix 49
AF4
D
214 236Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6Q56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
43 50parallel
Strand 3
A
21 26parallel
Strand 4
A
90 96parallel
Strand 5
A
117 122parallel
Strand 6
A
151 159anti-parallel
Strand 7
A
139 148anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
43 50parallel
Strand 3
B
21 26parallel
Strand 4
B
90 96parallel
Strand 5
B
117 122parallel
Strand 6
B
151 160anti-parallel
Strand 7
B
138 148anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 76first strand
Strand 2
C
43 50parallel
Strand 3
C
21 26parallel
Strand 4
C
90 97parallel
Strand 5
C
117 124parallel
Strand 6
C
151 160anti-parallel
Strand 7
C
138 148anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 76first strand
Strand 2
D
43 50parallel
Strand 3
D
21 26parallel
Strand 4
D
90 96parallel
Strand 5
D
117 122parallel
Strand 6
D
151 160anti-parallel
Strand 7
D
138 148anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il