Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q63 entry

There are 2 chains in PDB entry 6Q63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	ASN 774
B	GLN 24	ASP 530

There are 70 helices in PDB entry 6Q63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	78	Right-handed alpha
Helix 2	AA2	A	123	138	Right-handed alpha
Helix 3	AA3	A	174	188	Right-handed alpha
Helix 4	AA4	A	211	216	Right-handed alpha
Helix 5	AA5	A	242	256	Right-handed alpha
Helix 6	AA6	A	270	277	Right-handed alpha
Helix 7	AA7	A	278	281	Right-handed 310
Helix 8	AA8	A	304	322	Right-handed alpha
Helix 9	AA9	A	336	342	Right-handed alpha
Helix 10	AB1	A	342	353	Right-handed alpha
Helix 11	AB2	A	361	381	Right-handed alpha
Helix 12	AB3	A	390	393	Right-handed 310
Helix 13	AB4	A	408	417	Right-handed alpha
Helix 14	AB5	A	438	442	Right-handed 310
Helix 15	AB6	A	451	458	Right-handed alpha
Helix 16	AB7	A	466	471	Right-handed alpha
Helix 17	AB8	A	487	496	Right-handed alpha
Helix 18	AB9	A	497	508	Right-handed alpha
Helix 19	AC1	A	509	513	Right-handed 310
Helix 20	AC2	A	514	532	Right-handed alpha
Helix 21	AC3	A	538	542	Right-handed 310
Helix 22	AC4	A	638	644	Right-handed 310
Helix 23	AC5	A	687	691	Right-handed 310
Helix 24	AC6	B	60	78	Right-handed alpha
Helix 25	AC7	B	123	138	Right-handed alpha
Helix 26	AC8	B	174	188	Right-handed alpha
Helix 27	AC9	B	211	216	Right-handed alpha
Helix 28	AD1	B	242	255	Right-handed alpha
Helix 29	AD2	B	270	277	Right-handed alpha
Helix 30	AD3	B	278	281	Right-handed 310
Helix 31	AD4	B	304	322	Right-handed alpha
Helix 32	AD5	B	338	341	Right-handed 310
Helix 33	AD6	B	342	353	Right-handed alpha
Helix 34	AD7	B	361	381	Right-handed alpha
Helix 35	AD8	B	390	393	Right-handed 310
Helix 36	AD9	B	408	417	Right-handed alpha
Helix 37	AE1	B	438	442	Right-handed 310
Helix 38	AE2	B	451	458	Right-handed alpha
Helix 39	AE3	B	468	471	Right-handed 310
Helix 40	AE4	B	487	496	Right-handed alpha
Helix 41	AE5	B	497	508	Right-handed alpha
Helix 42	AE6	B	509	513	Right-handed 310
Helix 43	AE7	B	514	533	Right-handed alpha
Helix 44	AE8	B	538	542	Right-handed 310
Helix 45	AE9	B	638	644	Right-handed 310
Helix 46	AF1	B	687	691	Right-handed 310
Helix 47	AF2	C	60	78	Right-handed alpha
Helix 48	AF3	C	123	138	Right-handed alpha
Helix 49	AF4	C	174	188	Right-handed alpha
Helix 50	AF5	C	211	216	Right-handed alpha
Helix 51	AF6	C	242	255	Right-handed alpha
Helix 52	AF7	C	270	277	Right-handed alpha
Helix 53	AF8	C	278	281	Right-handed 310
Helix 54	AF9	C	304	322	Right-handed alpha
Helix 55	AG1	C	336	342	Right-handed alpha
Helix 56	AG2	C	342	352	Right-handed alpha
Helix 57	AG3	C	361	381	Right-handed alpha
Helix 58	AG4	C	390	393	Right-handed 310
Helix 59	AG5	C	408	417	Right-handed alpha
Helix 60	AG6	C	438	442	Right-handed 310
Helix 61	AG7	C	451	458	Right-handed alpha
Helix 62	AG8	C	469	471	Right-handed 310
Helix 63	AG9	C	487	496	Right-handed alpha
Helix 64	AH1	C	497	508	Right-handed alpha
Helix 65	AH2	C	509	513	Right-handed 310
Helix 66	AH3	C	514	520	Right-handed alpha
Helix 67	AH4	C	522	533	Right-handed alpha
Helix 68	AH5	C	538	542	Right-handed 310
Helix 69	AH6	C	638	644	Right-handed 310
Helix 70	AH7	C	687	691	Right-handed 310

There are 29 sheets in PDB entry 6Q63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	146	148	parallel
Strand 3	A	46	48	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	151	155	anti-parallel
Strand 3	A	108	112	anti-parallel
Strand 4	A	117	121	anti-parallel
Strand 5	A	93	98	parallel
Strand 6	A	53	56	parallel
Strand 7	A	83	86	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	167	first strand
Strand 2	A	192	196	parallel
Strand 3	A	259	263	parallel
Strand 4	A	326	330	parallel
Strand 5	A	384	388	parallel
Strand 6	A	401	404	parallel
Strand 7	A	421	423	parallel
Strand 8	A	473	478	parallel
Strand 9	A	161	167	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	232	233	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	550	first strand
Strand 2	A	555	561	anti-parallel
Strand 3	A	588	590	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	571	first strand
Strand 2	A	594	600	anti-parallel
Strand 3	A	610	614	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	626	first strand
Strand 2	A	665	686	anti-parallel
Strand 3	A	766	774	anti-parallel
Strand 4	A	658	660	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	626	first strand
Strand 2	A	665	686	anti-parallel
Strand 3	A	727	748	anti-parallel
Strand 4	A	697	703	anti-parallel
Strand 5	A	710	716	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	151	155	anti-parallel
Strand 3	B	108	113	anti-parallel
Strand 4	B	116	120	anti-parallel
Strand 5	B	94	97	parallel
Strand 6	B	54	56	parallel
Strand 7	B	84	86	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	146	148	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	192	196	parallel
Strand 3	B	259	266	parallel
Strand 4	B	326	330	parallel
Strand 5	B	384	388	parallel
Strand 6	B	401	404	parallel
Strand 7	B	421	423	parallel
Strand 8	B	473	478	parallel
Strand 9	B	161	167	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	202	203	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	237	238	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	232	233	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	550	first strand
Strand 2	B	555	561	anti-parallel
Strand 3	B	588	590	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	571	first strand
Strand 2	B	594	600	anti-parallel
Strand 3	B	610	614	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	626	first strand
Strand 2	B	665	686	anti-parallel
Strand 3	B	766	773	anti-parallel
Strand 4	B	658	660	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	626	first strand
Strand 2	B	665	686	anti-parallel
Strand 3	B	727	748	anti-parallel
Strand 4	B	697	703	anti-parallel
Strand 5	B	710	716	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	146	148	parallel
Strand 3	C	46	48	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	151	155	anti-parallel
Strand 3	C	108	112	anti-parallel
Strand 4	C	116	120	anti-parallel
Strand 5	C	93	97	parallel
Strand 6	C	53	55	parallel
Strand 7	C	83	84	parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	167	first strand
Strand 2	C	192	196	parallel
Strand 3	C	259	266	parallel
Strand 4	C	326	330	parallel
Strand 5	C	384	388	parallel
Strand 6	C	401	404	parallel
Strand 7	C	421	423	parallel
Strand 8	C	473	478	parallel
Strand 9	C	161	167	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	202	203	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	232	233	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	550	first strand
Strand 2	C	555	561	anti-parallel
Strand 3	C	588	590	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	571	first strand
Strand 2	C	594	600	anti-parallel
Strand 3	C	610	614	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	626	first strand
Strand 2	C	665	686	anti-parallel
Strand 3	C	766	774	anti-parallel
Strand 4	C	658	660	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	626	first strand
Strand 2	C	665	686	anti-parallel
Strand 3	C	727	748	anti-parallel
Strand 4	C	697	703	anti-parallel
Strand 5	C	710	716	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q63

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q63